Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120395.Seq
         (715 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila...    31   0.76 
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila...    31   0.76 
At4g33890.2 68417.m04809 expressed protein                             30   1.8  
At4g33890.1 68417.m04808 expressed protein                             30   1.8  
At1g72760.1 68414.m08413 protein kinase family protein contains ...    28   7.1  
At1g08170.1 68414.m00902 histone H2B family protein similar to h...    27   9.3  

>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
           to ribosomal protein S7 GB:AAD26256 from [Secale
           cereale]
          Length = 191

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +1

Query: 409 RVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVIF*Y 522
           +++ +FL+ +++ND  YKL   V    KL+ + V+F Y
Sbjct: 149 KIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEY 186


>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
           to ribosomal protein S7 GB:AAD26256 from [Secale
           cereale]
          Length = 191

 Score = 31.1 bits (67), Expect = 0.76
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +1

Query: 409 RVINMFLNDEIENDKIYKLVETVDSSNKLSRRQVIF*Y 522
           +++ +FL+ +++ND  YKL   V    KL+ + V+F Y
Sbjct: 149 KIMKVFLDSKLKNDTEYKLETMVGVYRKLTGKDVVFEY 186


>At4g33890.2 68417.m04809 expressed protein
          Length = 342

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
 Frame = -1

Query: 655 GNWYASSSF--VTRKFAKKLSSS-----CVKTLSSTNLCNVNVTL-TLFNNACIKKSP 506
           GN  A S F  + R FA K++ S     C+KT+   N+   N  + ++  NACI KSP
Sbjct: 24  GNQRAESYFNQLGRFFALKITKSEFDKLCIKTIGRQNIHLHNRLIRSIIKNACIAKSP 81


>At4g33890.1 68417.m04808 expressed protein
          Length = 342

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
 Frame = -1

Query: 655 GNWYASSSF--VTRKFAKKLSSS-----CVKTLSSTNLCNVNVTL-TLFNNACIKKSP 506
           GN  A S F  + R FA K++ S     C+KT+   N+   N  + ++  NACI KSP
Sbjct: 24  GNQRAESYFNQLGRFFALKITKSEFDKLCIKTIGRQNIHLHNRLIRSIIKNACIAKSP 81


>At1g72760.1 68414.m08413 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 697

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +2

Query: 164 KAKSVRKKLEIEQALDAILNKNTSSID***GSLKCPI**KTFSPN 298
           ++ S R KL  +Q L ++L  +T+SID    S+  P+  +T  PN
Sbjct: 157 RSASHRHKLSRQQNLSSLLYNSTNSIDSDSASISSPVSTQTNKPN 201


>At1g08170.1 68414.m00902 histone H2B family protein similar to
           histone H2B from Chlamydomonas reinhardtii [SP|P54347,
           SP|P54346, SP|P50565], Volvox carteri [SP|P16867,
           SP|P16868]; contains Pfam profile PF00125 Core histone
           H2A/H2B/H3/H4
          Length = 243

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 367 EQVYPDKDFSLKLKRVINMFLNDEIE 444
           +QV+PD   + K   V+NMF+ D  E
Sbjct: 160 KQVHPDLGITSKAMTVVNMFMGDMFE 185


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,112,103
Number of Sequences: 28952
Number of extensions: 234673
Number of successful extensions: 633
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)