Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120392.Seq
         (775 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)                   28   7.3  
SB_27402| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_24578| Best HMM Match : rve (HMM E-Value=4.8e-35)
          Length = 1772

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
 Frame = -2

Query: 720 NYSKFRK--LKYSFGTNLKHRKKIGNQYSISLN*LHLSFKLELHPF*VGAESAPRVPNCS 547
           NYS+  K      FG    H    G  ++I  +   L   L+     +   ++PR+ +C 
Sbjct: 144 NYSQLDKEAAAIMFGVRKFHSYLYGRSFTIYTDHKPLLGLLQSTKQ-IPTSASPRILSCQ 202

Query: 546 ELLLLWGSHLTFKQLGR 496
           +  LLWGS +     GR
Sbjct: 203 DGCLLWGSRVVIPPQGR 219


>SB_27402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 12/19 (63%), Positives = 14/19 (73%)
 Frame = +1

Query: 85  NSEVAVDKVGDENKGDAKS 141
           NSE+  DKV DE KGD+ S
Sbjct: 2   NSEIPCDKVTDEPKGDSTS 20


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,529,093
Number of Sequences: 59808
Number of extensions: 237784
Number of successful extensions: 473
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)