Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120391.Seq
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   2.5  
SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|ch...    26   5.7  
SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces pom...    26   7.5  
SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|...    26   7.5  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    25   9.9  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 373  SLYLKSVFVKACLFTIMFFPSNKVEAFYDFQPRR 272
            SLY+ +VF+  CL  ++   +     F +FQPRR
Sbjct: 1586 SLYMYNVFLLQCLTELLSGYNACKRCFLNFQPRR 1619


>SPBC16A3.03c |lyn1||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = -1

Query: 820 FYFKNNLQCITSNYCTTHLIALLQSFEEIKHSQITYSFRAI 698
           F  +N L C  S +    LI LL       HS     FRA+
Sbjct: 500 FLLENQLNCKHSLFQRKSLIILLNGILNCPHSSYDLQFRAV 540


>SPCC1442.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 409

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 328 IMFFPSNKVEAFYDFQPRRGLHLYCT-DKLNRNS 230
           I+ FP++   AFY      G++LY   D LN N+
Sbjct: 209 IVIFPNSSECAFYGNNNDEGMYLYSNGDDLNENT 242


>SPAC26H5.03 |||WD repeat protein Cac2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 506 IHYHNWTKLQWDHQGSVSFLIKKDSSKSIHPVESYEVTNKKNIQSNL 646
           +HY N T + W+  G+V  +   D   S+   E  E+  K   + +L
Sbjct: 417 LHYSNLTDIAWNDDGNVLLMTSIDGFCSVITFEPGELGVKSQHKISL 463


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = -3

Query: 722 NHIFFQGNFKSILLLRMIIFLTDFKKG-STVC--FFCLLP 612
           NH  F    KS+  + M IFL   +KG  TVC  FF   P
Sbjct: 397 NHYRFSDTKKSVSQIEMEIFLALVEKGVKTVCGQFFMANP 436


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,434,835
Number of Sequences: 5004
Number of extensions: 72631
Number of successful extensions: 151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)