Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120391.Seq
         (829 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0690 - 5306754-5307047,5307107-5307279,5308223-5308370,530...    29   6.0  

>01_01_0690 -
           5306754-5307047,5307107-5307279,5308223-5308370,
           5309110-5309356,5309694-5309839,5312482-5312707,
           5313652-5313874,5314054-5314202,5315345-5315514,
           5316064-5316135,5317610-5317741,5317813-5317900,
           5319440-5319656,5320123-5320306,5320644-5320727,
           5321148-5321242,5321519-5321562,5321707-5322367,
           5323053-5323356
          Length = 1218

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +1

Query: 535 MGSPGKRQLSNKKRFIKIDSPSRKL*GNKQKKHTVEP 645
           +GSPG R  S  +R ++IDSP + +    ++  T  P
Sbjct: 218 VGSPGHRMPSGLQRHMEIDSPIQPIVSTPERVSTPSP 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,070,452
Number of Sequences: 37544
Number of extensions: 399538
Number of successful extensions: 667
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)