Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120389.Seq
(661 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 30 0.26
SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc... 27 3.2
SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha... 26 4.2
SPCC777.09c |arg1||acetylornithine aminotransferase|Schizosaccha... 26 4.2
SPAC589.11 |mug82||translation release factor |Schizosaccharomyc... 26 4.2
SPBP8B7.24c |atg8||autophagy associated protein Atg8 |Schizosacc... 26 5.5
SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual 26 5.5
SPCC613.11c |meu23|B13958-2|DUF1773 family protein 2|Schizosacch... 26 5.5
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 7.3
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 25 7.3
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 25 7.3
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 25 9.7
SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyce... 25 9.7
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 30.3 bits (65), Expect = 0.26
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +2
Query: 482 VSKVYKNQTGKHAGATIFYRNCGRVQNEK-LLK*TGIELLTTNSNMDQLNCYCKFSWKK 655
++K Y +H G + Y +V N K ++K ++LL SN+ +C CKFS KK
Sbjct: 1301 LTKYYGFSFFRH-GNIVAYGKSRKVANAKYIMKQRLLKLLEDKSNLLLYSCNCKFSKKK 1358
>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
Ade2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 26.6 bits (56), Expect = 3.2
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -2
Query: 252 NSACISLRVKQSELHPPKCVQFLGGIVVVYL--F*SGVEKVLQ 130
N + S L PKC +G VVVYL F S +EK+ Q
Sbjct: 59 NGVTYDFHILPSGLVNPKCQNLIGSGVVVYLPAFFSELEKLEQ 101
>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 473
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +1
Query: 58 YDYSN-YIEFFSFVRSIKKRFDNRQLQDFFYATL 156
YD S+ Y+EF + S++K+ D+ + FY L
Sbjct: 83 YDQSSSYVEFRKHLESVEKKADSSKALRIFYIAL 116
>SPCC777.09c |arg1||acetylornithine
aminotransferase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 441
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = +2
Query: 482 VSKVYKNQTGKHAGAT----IFYRNCGRVQNEKLLK 577
+S V N K++G IF+ NCG NE LK
Sbjct: 119 LSNVINNSLAKNSGIAGPTKIFFANCGTEANETALK 154
>SPAC589.11 |mug82||translation release factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 182
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +2
Query: 536 YRNCGRVQNEKLLK*TGIELLTTNSNMDQLNCYCKFSWK 652
+RNC +++N +L+ + L T +QL + WK
Sbjct: 5 FRNCFKIKNSRLIYDNINKCLLTKEETNQLLKFIHLKWK 43
>SPBP8B7.24c |atg8||autophagy associated protein Atg8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 25.8 bits (54), Expect = 5.5
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 410 VFITNELPGCWALKKYIHQEYKRVVSKVYKNQTGKHAGATIF 535
+FI LP AL I++E+K +Y +G++ T+F
Sbjct: 78 IFIDEILPPTAALMSTIYEEHKSEDGFLYITYSGENTFGTVF 119
>SPBC365.08c |||Der1-like |Schizosaccharomyces pombe|chr 2|||Manual
Length = 224
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 58 YDYSNYIEFFSFVRSIKK 111
Y YS Y+E F F R+ KK
Sbjct: 81 YQYSTYLENFVFARNAKK 98
>SPCC613.11c |meu23|B13958-2|DUF1773 family protein
2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 254
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 217 GLLDPKRNTSAVQEAINTLKHTMNT 291
G+ D +R + +Q +NT++ TMNT
Sbjct: 120 GMADLQRTINTMQGTMNTMQGTMNT 144
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -1
Query: 475 LVFLMNIFF*CPTAWQFV 422
L+FL+ IF+ CP A+ +V
Sbjct: 1282 LLFLLTIFYPCPIAYTYV 1299
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 25.4 bits (53), Expect = 7.3
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +1
Query: 94 VRSIKKRFDNRQL--QDFFYATLKKIDNNDAPQKLHALRRV*FGLLDPKRNT 243
+ SI KRF NRQ+ +D + +I NN KL+A + L RNT
Sbjct: 415 IASIFKRFQNRQMKNKDARSQFMTEIINNIRSIKLYAWENIFLQKLLQLRNT 466
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 25.4 bits (53), Expect = 7.3
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +1
Query: 85 FSFVRSIKKRFDNRQLQDFFYATLKKIDNNDAPQKLHALRRV*FGLLDPKRN 240
FS SIK R++NR Q F K+ + KL+ R+ ++ KRN
Sbjct: 690 FSEQESIKLRWENRIDQMFTKKFGKRASEWKSSSKLNQARQTILDIIGSKRN 741
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/54 (25%), Positives = 22/54 (40%)
Frame = +3
Query: 228 PEAKYKRCSGSHQHAQAHNEYRRRLRAHVGHRVV*AYKRIYKS*FRPFHSNYRQ 389
P +Y+R + +EYRR R+ Y+R +RP YR+
Sbjct: 222 PRGEYRRNNRDEYRRGGRDEYRRNSRSDYRRPHDDEYRRPRGDEYRPGRDEYRR 275
>SPAC8F11.03 |msh3|swi4|MutS protein homolog 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1004
Score = 25.0 bits (52), Expect = 9.7
Identities = 29/106 (27%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Frame = -2
Query: 318 VQH-VRADVFCIHCVLERVDGFLNSACISLRVKQSELHPPKCVQFLGGIVVVYLF*SGVE 142
VQH V+ DV LE + F +S CI K ELH K V+ L + ++ L +
Sbjct: 322 VQHAVQQDV---KLALENLQDFFSSKCIMSGSKIIELHMEK-VKSLHSLSIICLD-MAIS 376
Query: 141 KVLQLPIIETLLDAAHKTKKFNVIAVIVRDQLFVVHIIKIFVERHD 4
+++ +E L A++ + F+ I+ +V + + +++FV + D
Sbjct: 377 YLMEFS-LEDLFVASNFYQPFDSISSMVLSKQ-ALEGLELFVNQTD 420
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,777,626
Number of Sequences: 5004
Number of extensions: 58295
Number of successful extensions: 161
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -