Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120389.Seq
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0557 + 4103721-4104616,4105428-4105626                           32   0.35 
03_05_0625 - 26225201-26225879,26226706-26227553                       29   2.5  
03_06_0078 + 31505126-31507933                                         29   4.3  
05_01_0283 - 2198107-2198386,2198641-2199290                           28   5.7  
07_03_0603 - 19890664-19890823,19891104-19891329,19891498-198916...    28   7.6  
05_05_0203 - 23229538-23229720,23229808-23230007,23230087-232307...    28   7.6  
02_05_1139 - 34381575-34381878,34382181-34382865,34383479-34383881     28   7.6  

>02_01_0557 + 4103721-4104616,4105428-4105626
          Length = 364

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 19/59 (32%), Positives = 32/59 (54%)
 Frame = -2

Query: 234 LRVKQSELHPPKCVQFLGGIVVVYLF*SGVEKVLQLPIIETLLDAAHKTKKFNVIAVIV 58
           LR++      PK ++FLG +V+ YL  + +   L + +   L+ +AHK  K   I +IV
Sbjct: 82  LRMENGGHVEPKTIKFLGFVVMGYLLITNLGGSLLIYLYLNLVPSAHKILKRKGIGIIV 140


>03_05_0625 - 26225201-26225879,26226706-26227553
          Length = 508

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 253 EQRLYFASGQAVRITPA*VRAIFGGHRC 170
           E+R +   G+A R T A +R  F GH+C
Sbjct: 236 EERTFHRQGEAARTTIADMRMDFSGHKC 263


>03_06_0078 + 31505126-31507933
          Length = 935

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = +1

Query: 433 RLLGIKKIYSSRIQAGRFKGLQKSNR 510
           RLLG ++ ++SR   GRF G++++ R
Sbjct: 668 RLLGRREAHNSRFNGGRFVGVEEAER 693


>05_01_0283 - 2198107-2198386,2198641-2199290
          Length = 309

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 565 FILHTAAVSVEDCCSGMFTCLIFVN 491
           F+L   ++S +DCC+G+  CL   N
Sbjct: 108 FLLGYMSISPKDCCNGLLLCLCCKN 132


>07_03_0603 - 19890664-19890823,19891104-19891329,19891498-19891636,
            19891849-19891942,19892291-19892311,19892506-19892941,
            19893133-19893280,19893369-19893476,19893543-19893659,
            19893960-19894016,19894488-19894553,19895140-19895328,
            19895410-19895523,19895684-19895766,19895857-19896322,
            19896832-19897476
          Length = 1022

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
 Frame = -2

Query: 396  RTFVGNYCEMA*ISSYIFFYTLKRHDVQHVRADVFC-----IHCVLERVDGFLNSACISL 232
            +T V N   +  I SY+  Y L++   Q +  D+ C     I  V +R    +   C +L
Sbjct: 835  QTAVRNKKRITIIQSYVKAYLLRKRSKQEITDDIMCLINRLIAAVSQRSISTIRQICATL 894

Query: 231  RVKQSELHPPKCVQ 190
                   H  KC Q
Sbjct: 895  STATE--HSEKCCQ 906


>05_05_0203 -
           23229538-23229720,23229808-23230007,23230087-23230718,
           23231493-23231844,23231926-23232136,23232413-23232472
          Length = 545

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 452 KYIHQEYKRVVSKVYKNQTGKHAGATIFYRNCGRVQNEKLLK 577
           +Y+ + Y   V K+++ +  +     IFY  CG V  EK+ K
Sbjct: 239 RYVAEVYTPAVYKIFEEEVMQTLNCDIFY--CGEVDVEKVYK 278


>02_05_1139 - 34381575-34381878,34382181-34382865,34383479-34383881
          Length = 463

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +2

Query: 461 HQEYKRVVSKVYKNQTGK-HAGATIF-YRNCGRVQNEKLL 574
           HQ Y R++SKV    +G  H G  ++ +R CG+   + L+
Sbjct: 273 HQRYYRLMSKVSPPTSGSWHKGCVMYAHRGCGQAWMQPLV 312


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,286,007
Number of Sequences: 37544
Number of extensions: 345876
Number of successful extensions: 829
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)