Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120389.Seq
         (661 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8287| Best HMM Match : UVR (HMM E-Value=0.07)                       30   1.5  
SB_15525| Best HMM Match : Galactosyl_T (HMM E-Value=1.1e-31)          29   3.4  
SB_16669| Best HMM Match : Phage_integrase (HMM E-Value=0.28)          29   3.4  
SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  

>SB_8287| Best HMM Match : UVR (HMM E-Value=0.07)
          Length = 187

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 223 LDPKRNTSAVQEAINTLKHTMNTEDVCAHMLDIVSFER 336
           LDPK+N    QEA+ TL++ M  +D     L+ +   R
Sbjct: 106 LDPKQNAGQSQEAVATLRNQMQEKDKLIENLEGMQLHR 143


>SB_15525| Best HMM Match : Galactosyl_T (HMM E-Value=1.1e-31)
          Length = 522

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = -3

Query: 656 FFSKKIYNSNLAGPCWNLLSRARFQFISTTFHFA--HGRSFCRRLLLRHVYLFDFCKPLK 483
           FF + +Y     GP +   S     FI  T+HF   H       +LLRH+ +    +P+ 
Sbjct: 345 FFGEDVYPPYCGGPFYVFTSNLLPDFIRLTYHFKPFHIEDAYMGILLRHMGI----RPVF 400

Query: 482 RPACILDEYI 453
            P  +L++++
Sbjct: 401 IPGFLLNDWM 410


>SB_16669| Best HMM Match : Phage_integrase (HMM E-Value=0.28)
          Length = 580

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/47 (21%), Positives = 26/47 (55%)
 Frame = -2

Query: 297 VFCIHCVLERVDGFLNSACISLRVKQSELHPPKCVQFLGGIVVVYLF 157
           +FC++  L  +   +++ C+ ++     + PP    +L G+ +++LF
Sbjct: 288 LFCLYFDLTPLPADIDTVCLYVQFLSRSIAPPSIRNYLNGVKLLHLF 334


>SB_41175| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3259

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/38 (44%), Positives = 19/38 (50%)
 Frame = -2

Query: 273 ERVDGFLNSACISLRVKQSELHPPKCVQFLGGIVVVYL 160
           E V GFL S  ISLR K  +   P  +  L  IVV  L
Sbjct: 457 EPVSGFLQSLVISLRSKHRKTTAPNLIGMLLFIVVALL 494


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,813,384
Number of Sequences: 59808
Number of extensions: 439435
Number of successful extensions: 933
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)