Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120387.Seq
         (709 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    27   2.6  
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ...    27   3.5  
SPCC16C4.21 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        26   4.6  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    25   8.0  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   8.0  

>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +3

Query: 195 DDQWYRAKIEKITDNRQVQVYTSTMEIE 278
           DD+W   ++  +  + ++QV++ T+EIE
Sbjct: 697 DDEWKNFELVVVESSGEIQVFSLTIEIE 724


>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 878

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
 Frame = +2

Query: 242 AGPSLYIDYGNRETLDITRLAALPVGTEHDSPFATEYVLCCVKFPSDPDDRAEAVTSFYN 421
           A   L  DYG+ E +    +++LP       P A    L  V+ P    D  E     + 
Sbjct: 726 AADVLLYDYGSVEQIPFKNISSLPDTYTKLKPQAQLARLSYVQLPPPSSDYYEDARLVFR 785

Query: 422 DV-VGKRLLLNVE-IRGSPAAVTLVDPN 499
           ++ + K L+  V+   G+  +VTL +P+
Sbjct: 786 ELAMNKGLVAKVDGHEGNVYSVTLYNPS 813


>SPCC16C4.21 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 81

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = +3

Query: 6   LKYDRVVITEVTPEGHFYAQNVDLGVKLESLMETIHTEFRNSHPLP 143
           L+Y    I    P    +  + D GV L   + T+H E  +   LP
Sbjct: 11  LRYSECCILTANPSVQHFVMHDDAGVPLTYSVSTLHAELTDHLYLP 56


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = +2

Query: 395 AEAVTSFYNDVVGKRLLLNVEIRGS--PAAVTLVDPNTNIIWARTLS 529
           +E V S   +VV K L +  E   S  PAA  L+    N  W +TL+
Sbjct: 2   SENVISSSKNVVSKLLYVKDEYWPSVAPAATELISKLINAFWCQTLN 48


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +2

Query: 380  DPDDRAEAVTSFYNDVVGKRLLLNVEIRGSPAAVTLVD 493
            +P  R EAVT F ND     LLL   + G    +T  D
Sbjct: 1774 EPTKRQEAVTKFNNDPSIDVLLLTTHVGGLGLNLTGAD 1811


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,127,378
Number of Sequences: 5004
Number of extensions: 68981
Number of successful extensions: 187
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)