Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120387.Seq
(709 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0039 - 19118632-19118820,19119018-19119395,19120151-191203... 47 2e-05
04_03_0813 - 19929562-19929798,19930209-19930580,19930686-199310... 31 0.90
09_02_0116 + 4420808-4421323,4421367-4421918 29 2.7
04_04_0491 - 25605560-25605684,25605826-25605928,25606026-256075... 29 2.7
10_08_0295 - 16581014-16583071 29 3.6
10_01_0316 + 3479574-3482679,3482766-3483127 29 4.8
05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663 29 4.8
04_04_1473 - 33843414-33843788,33843833-33844261,33845738-33846100 29 4.8
07_03_0336 + 16911947-16912144,16912636-16912692,16912917-169136... 28 6.3
12_02_0977 + 24999211-25000275,25000375-25000521,25000805-25001179 28 8.4
10_08_0737 - 20210551-20211216 28 8.4
04_04_0050 - 22360294-22361804,22362087-22362378,22363367-223634... 28 8.4
03_01_0084 + 676538-676669,677828-677959,678085-678210,678820-67... 28 8.4
01_02_0015 + 10191793-10191957,10192085-10192229,10192331-101924... 28 8.4
>02_04_0039 -
19118632-19118820,19119018-19119395,19120151-19120345,
19120425-19120502,19120567-19120752,19120828-19121058,
19121137-19121490,19121588-19121785,19121869-19122039,
19122156-19122263,19122362-19122580,19122665-19122871,
19122978-19123196,19123315-19123389,19123749-19123901
Length = 986
Score = 46.8 bits (106), Expect = 2e-05
Identities = 25/68 (36%), Positives = 39/68 (57%)
Frame = +3
Query: 18 RVVITEVTPEGHFYAQNVDLGVKLESLMETIHTEFRNSHPLPGSYAPRKGAICAARFTAD 197
+VV+TEV G FY Q V ++ S+ + + + P+ G++ P KG I A+F+AD
Sbjct: 733 KVVVTEVLGGGKFYVQTVG-DHRVASIQQQLASLKLKDAPVIGAFNPVKGEIVLAQFSAD 791
Query: 198 DQWYRAKI 221
+ W RA I
Sbjct: 792 NSWNRAMI 799
Score = 31.1 bits (67), Expect = 0.90
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = +2
Query: 257 YIDYGNRETLDITRLAALPVGTEHDSPFATEYVLCCVKFPSDPDDRAEAVTSFYND 424
YIDYGN+E + +R+ A L +K P+ DD + ND
Sbjct: 818 YIDYGNQEVVPYSRIRPADPSISSSPALAQLCSLAFIKVPNLEDDFGHEAAVYLND 873
>04_03_0813 - 19929562-19929798,19930209-19930580,19930686-19931039,
19931120-19931188,19931294-19931479,19932762-19932989,
19933655-19934020,19934154-19934354,19934923-19935093,
19935178-19935285,19935423-19935635,19936093-19936299,
19936485-19936586,19936714-19936902,19937766-19937933
Length = 1056
Score = 31.1 bits (67), Expect = 0.90
Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Frame = +2
Query: 257 YIDYGNRETLDITRLAALPVGTEHDSPFATEYVLCCVKFPSDPDDRAEAVTSFYNDVV-- 430
YIDYGN+E + + L + + P A L VK PS D + + N ++
Sbjct: 871 YIDYGNQELVPHSCLRPINLSISSIPPLAKLCSLAFVKVPSLNDYLGQEAAMYLNSILLD 930
Query: 431 -GKRLLLNVEIRGSPAAVTLVDPNTNIIWARTL 526
G+ VE R + + L T I TL
Sbjct: 931 NGREFEAIVEERDAASGGKLQGQGTGEILGVTL 963
>09_02_0116 + 4420808-4421323,4421367-4421918
Length = 355
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = -3
Query: 278 LDFHSRCINLDLPIVCYFFNLCPVPLVIGCKTSSTDGSLPWSIRSRQWVTVSKLSVYSF 102
L F + C+ ++L C + + P ++ C T GSL W IR+ W + F
Sbjct: 155 LRFGAVCVAVNLGRPCAWVAIEFDPDLLECLTVRAAGSLYWHIRNNSWTLALDTATLQF 213
>04_04_0491 -
25605560-25605684,25605826-25605928,25606026-25607592,
25608694-25610198
Length = 1099
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 540 RVSGAGS*QPTGDIDGRVSRPLRSTPRARDFNLWRHGDITE 662
R+ +G +GD R++ P T + D W H D TE
Sbjct: 861 RMLSSGDHTSSGDFQSRIAFPTLETLKFTDMESWEHWDETE 901
>10_08_0295 - 16581014-16583071
Length = 685
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +1
Query: 628 TSTCGGTVTSPRTMQWNSGCVASCTPP 708
+S GG + + RT QW GC PP
Sbjct: 251 SSDSGGPIPTVRTFQWYLGCADGTQPP 277
>10_01_0316 + 3479574-3482679,3482766-3483127
Length = 1155
Score = 28.7 bits (61), Expect = 4.8
Identities = 21/62 (33%), Positives = 29/62 (46%)
Frame = -2
Query: 396 ARSSGSEGNFTQQRTYSVAKGESCSVPTGSAANLVMSNVSRFP*SMYKLGPAYCLLFFQS 217
+RSS S GN T + G +CS TG+ A L +S V ++ P C L +
Sbjct: 64 SRSSSSSGNATAPPPHCAFLGVTCS-DTGAVAALNLSGVG-LTGALSASAPRLCALPASA 121
Query: 216 LP 211
LP
Sbjct: 122 LP 123
>05_05_0253 - 23632907-23633646,23633758-23635050,23636471-23636663
Length = 741
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +1
Query: 631 STCGGTVTSPRTMQWNSGCVASCTPP 708
S GG + + RT QW GC PP
Sbjct: 562 SDSGGPIPTVRTFQWYLGCADGTQPP 587
>04_04_1473 - 33843414-33843788,33843833-33844261,33845738-33846100
Length = 388
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = -3
Query: 311 GVLPIWLCLTSLDFHSRCINLDLPIVCYFFNLCPVP-LVIGCKTSSTDGSL 162
GVL + L + C+++D +V F+ CP P L +G K + G++
Sbjct: 174 GVLSEAMGLDTNALADACVDMDQKVVVNFYPKCPQPDLTLGLKRHTDPGTI 224
>07_03_0336 +
16911947-16912144,16912636-16912692,16912917-16913696,
16914666-16914713,16914795-16916032,16916776-16916860,
16917323-16917379
Length = 820
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = -1
Query: 511 DNVCVRINKGNSSW*S---TDFYIQEQPLANDIIIETGYSF 398
D C ++ GN+ W TDF Q A ++I+ +GYSF
Sbjct: 272 DMTCKIVDFGNACWADKQFTDFIQTRQYRAPEVILGSGYSF 312
>12_02_0977 + 24999211-25000275,25000375-25000521,25000805-25001179
Length = 528
Score = 27.9 bits (59), Expect = 8.4
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +3
Query: 588 RVSRPLRSTPRARDFNLWRHGDITEDDAV 674
++ + LRS PR + ++WR D+T+ + +
Sbjct: 387 QIEQILRSFPRVKSLDIWRCDDVTQAEGL 415
>10_08_0737 - 20210551-20211216
Length = 221
Score = 27.9 bits (59), Expect = 8.4
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -2
Query: 540 EPIFDKVLAQIMFVLGSTRVTAAG 469
+P+FD++L +IMF++G + G
Sbjct: 120 QPVFDRILRRIMFMVGVPMASGVG 143
>04_04_0050 -
22360294-22361804,22362087-22362378,22363367-22363420,
22363627-22363718,22364713-22364915,22365892-22366133,
22366205-22366330,22366800-22366907,22367394-22367457,
22367543-22367681,22367867-22368038,22368198-22368482
Length = 1095
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -2
Query: 402 ASARSSGSEGNFTQQRTYSVAKGESCSVPTGSAANLVMSNVSRFP 268
ASA +S G ++R SVA G++C G L+ R P
Sbjct: 41 ASASASAGAGGRERERRPSVAAGQACRAKKGEDFALLKPACERLP 85
>03_01_0084 +
676538-676669,677828-677959,678085-678210,678820-678882,
678964-679061,679133-679340,679859-679930,680016-680108,
680297-680398,680568-680665,681059-681140,681274-681362,
681960-682065,682145-682210,682527-682633,682907-683027,
683226-683411,683490-683789,683887-683967,684061-684225,
684297-684383,684476-684601,684750-684830,684917-684988,
685353-685364
Length = 934
Score = 27.9 bits (59), Expect = 8.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +3
Query: 177 AARFTADDQWYRAKIEKITDNRQVQVYTS 263
A F +DD WYR ++ +T+N +Q Y +
Sbjct: 444 AGDFVSDDIWYRV-VQFVTNNEDLQPYAA 471
>01_02_0015 +
10191793-10191957,10192085-10192229,10192331-10192419,
10193009-10193063,10193607-10193692,10194006-10194065
Length = 199
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = +2
Query: 179 CSFYS--R*PMVQGKD*KNNRQ*AGPSLYIDYGNRE--TLDITRLAALPVGTEHDSPFAT 346
CSF+ + M+QG D +NN G S+Y + + E TL T L + +
Sbjct: 113 CSFHRIIKDFMIQGGDFQNNNGTGGRSIYGECFDDENFTLKHTGPGVLSMANAGPDTNGS 172
Query: 347 EYVLCCVKF 373
++ +C VKF
Sbjct: 173 QFFICTVKF 181
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,657,779
Number of Sequences: 37544
Number of extensions: 503931
Number of successful extensions: 1294
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1294
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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