Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120387.Seq
         (709 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40029-11|AAA81130.1|  914|Caenorhabditis elegans Tudor staphylo...    65   4e-11
Z70780-5|CAD91633.1|  779|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z70780-4|CAD54137.2|  786|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z70780-3|CAA94828.2|  828|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical ...    29   4.3  
Z48009-8|CAA88081.1|  329|Caenorhabditis elegans Hypothetical pr...    28   5.7  

>U40029-11|AAA81130.1|  914|Caenorhabditis elegans Tudor
           staphylococcal nuclease homologprotein 1 protein.
          Length = 914

 Score = 65.3 bits (152), Expect = 4e-11
 Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
 Frame = +3

Query: 12  YDRVVITEVTPEG-HFYAQNVDLGVKLESLMETIHTEFRNSHPLPGSYAPRKGAICAARF 188
           + +V +T++ P    F AQN++ G K+E +   +        PL GSY  ++G +C A+F
Sbjct: 692 FRQVAVTDIAPGALRFSAQNIEDGPKIEKMTTEMRQALAEHPPLAGSYTTKRGDLCVAKF 751

Query: 189 TADDQWYRAKIEKITDNRQVQVY 257
           + D QWYR K+E +   +   VY
Sbjct: 752 SQDGQWYRCKVESVRAGQAEIVY 774



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 26/83 (31%), Positives = 41/83 (49%)
 Frame = +2

Query: 134 PIAWILCSKEGSHLCCSFYSR*PMVQGKD*KNNRQ*AGPSLYIDYGNRETLDITRLAALP 313
           P+A    +K G  LC + +S+         ++ R      +YIDYGNRET++  +LA +P
Sbjct: 734 PLAGSYTTKRGD-LCVAKFSQDGQWYRCKVESVRAGQAEIVYIDYGNRETIEAVKLAQIP 792

Query: 314 VGTEHDSPFATEYVLCCVKFPSD 382
            G  +      EY L   K P++
Sbjct: 793 AGFANFPAGVREYNLALAKLPNE 815



 Score = 31.1 bits (67), Expect = 0.81
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +1

Query: 511 LGKNLIKDGLVLVEQVRDSRLATLMAEY 594
           +GK+LI +GL L +  R+ RL TL+ +Y
Sbjct: 862 IGKSLIAEGLALADHRREPRLQTLVNDY 889


>Z70780-5|CAD91633.1|  779|Caenorhabditis elegans Hypothetical
           protein F46B6.5c protein.
          Length = 779

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +3

Query: 111 HTEFRNSHPLPGSYAPRKGAICAAR 185
           H    N+HP   S+APRKGA+ +A+
Sbjct: 690 HLARLNNHPKGQSFAPRKGALLSAK 714


>Z70780-4|CAD54137.2|  786|Caenorhabditis elegans Hypothetical
           protein F46B6.5b protein.
          Length = 786

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +3

Query: 126 NSHPLPGSYAPRKGAICAAR 185
           N+HP   S+APRKGA+ +A+
Sbjct: 702 NNHPKGQSFAPRKGALLSAK 721


>Z70780-3|CAA94828.2|  828|Caenorhabditis elegans Hypothetical
           protein F46B6.5a protein.
          Length = 828

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +3

Query: 126 NSHPLPGSYAPRKGAICAAR 185
           N+HP   S+APRKGA+ +A+
Sbjct: 744 NNHPKGQSFAPRKGALLSAK 763


>AL110477-8|CAB76739.1| 1042|Caenorhabditis elegans Hypothetical
            protein Y113G7B.12 protein.
          Length = 1042

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 286  RHN-QIGSTPGGY*ARFAFCDRVCSLLCEIPL 378
            +HN QIG+  G    +F F   + SLLCEIP+
Sbjct: 944  KHNCQIGAPRGSESRQFMFLVFINSLLCEIPI 975


>Z48009-8|CAA88081.1|  329|Caenorhabditis elegans Hypothetical
           protein AH6.11 protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 350 YVLCCVKFPSDPDDRAEAVTSFYNDVVGKRLLLNVEIR 463
           Y+L CV +PS   +R+    S Y  +    L+ +V +R
Sbjct: 171 YLLSCVSYPSQSVERSRLFASIYTFISSFNLVFSVLLR 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,687,373
Number of Sequences: 27780
Number of extensions: 404618
Number of successful extensions: 1050
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)