Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120387.Seq
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.8  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.6  
AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding prote...    22   6.6  
AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding prote...    22   6.6  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   8.7  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   8.7  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +3

Query: 75  LGVKLESLMETIHTEFRNSHPLPGSYAPRKG 167
           LG +L+ +   +    R      G+Y P KG
Sbjct: 177 LGKQLQGISTPVEAHLRKGRGAIGAYGPEKG 207


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 508 NVCVRINKGNSSW*STDFYIQEQPLANDIIIETGYSF 398
           N+   + +GNS   +T FY     LA DI+   GY+F
Sbjct: 362 NMLGNVIEGNSDSINTKFYGMYDILARDIL---GYNF 395


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 306 HSRWVLSTIRLLRQSMFSAV*NSPR 380
           H  W LST  LL Q    +   +PR
Sbjct: 106 HMAWQLSTAHLLAQLFLKSTEVTPR 130


>AF393496-1|AAL60421.1|  146|Apis mellifera odorant binding protein
           ASP6 protein.
          Length = 146

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 379 RGEFHTAENILCRKRRIVLST 317
           RGEF   E ++C  + I+++T
Sbjct: 59  RGEFPQDERLMCYMKCIMIAT 79


>AF339140-1|AAK01304.1|  120|Apis mellifera odorant binding protein
           protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 379 RGEFHTAENILCRKRRIVLST 317
           RGEF   E ++C  + I+++T
Sbjct: 33  RGEFPQDERLMCYMKCIMIAT 53


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 655 SPRTMQWNSGCVASCTPP 708
           +P    W   CVA C+PP
Sbjct: 379 NPAMGHWQMSCVA-CSPP 395



 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 644 PPQVEVASSWRAPERPRYSAINVASRLSR 558
           PP  + +   R    PRY++++   R SR
Sbjct: 400 PPSRKESGRRRRRRTPRYNSVSKIDRASR 428


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = -1

Query: 481 NSSW*STDFYIQEQPLAND 425
           N SW  T  Y    PLA D
Sbjct: 225 NRSWRITHSYFMPDPLAGD 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,768
Number of Sequences: 438
Number of extensions: 5219
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)