Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120387.Seq
         (709 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61780.1 68418.m07753 tudor domain-containing protein / nucle...    49   3e-06
At5g07350.1 68418.m00839 tudor domain-containing protein / nucle...    47   1e-05
At5g19400.1 68418.m02312 expressed protein                             29   3.0  
At3g19420.1 68416.m02463 expressed protein                             29   4.0  
At2g35155.1 68415.m04312 expressed protein                             28   7.0  
At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein ...    28   7.0  
At1g29540.1 68414.m03613 hypothetical protein                          23   8.8  
At5g45070.1 68418.m05527 disease resistance protein (TIR class),...    27   9.2  
At3g61070.1 68416.m06835 peroxisomal biogenesis factor 11 family...    27   9.2  
At2g19810.1 68415.m02316 zinc finger (CCCH-type) family protein ...    27   9.2  

>At5g61780.1 68418.m07753 tudor domain-containing protein / nuclease
           family protein contains Pfam domains PF00567: Tudor
           domain and PF00565: Staphylococcal nuclease homologue
          Length = 985

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 26/68 (38%), Positives = 37/68 (54%)
 Frame = +3

Query: 18  RVVITEVTPEGHFYAQNVDLGVKLESLMETIHTEFRNSHPLPGSYAPRKGAICAARFTAD 197
           +VV+TEV   G FY Q V    K+ S+   +        P+ GS+ P+KG I  A+F+ D
Sbjct: 734 KVVVTEVLGGGRFYVQTVG-DQKVASIQNQLAALSLKDAPIIGSFNPKKGDIVLAQFSLD 792

Query: 198 DQWYRAKI 221
           + W RA I
Sbjct: 793 NSWNRAMI 800


>At5g07350.1 68418.m00839 tudor domain-containing protein / nuclease
           family protein contains Pfam domains PF00567: Tudor
           domain and PF00565: Staphylococcal nuclease homologue
          Length = 991

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 24/68 (35%), Positives = 38/68 (55%)
 Frame = +3

Query: 18  RVVITEVTPEGHFYAQNVDLGVKLESLMETIHTEFRNSHPLPGSYAPRKGAICAARFTAD 197
           +VV+TEV   G FY Q+     K+ S+   + +      P+ GS+ P++G I  A+F+ D
Sbjct: 738 KVVVTEVLGGGRFYVQSAG-DQKIASIQNQLASLSIKDAPIIGSFNPKRGDIVLAQFSLD 796

Query: 198 DQWYRAKI 221
           + W RA I
Sbjct: 797 NSWNRAMI 804



 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 257 YIDYGNRETLDITRLAALPVGTEHDSPFATEYVLCCVKFPSDPDD 391
           YIDYGN+ET+  + +  +          A    L  +K PS  DD
Sbjct: 823 YIDYGNQETVPYSAIRPIDPSVSAAPGLAQLCRLAYIKVPSLEDD 867


>At5g19400.1 68418.m02312 expressed protein
          Length = 1093

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +2

Query: 347 EYVLCC--VKFPSDPDDRAEAV-TSFYNDVV 430
           E++ CC  +   SDPDDR  AV  SF+N  V
Sbjct: 447 EWLACCPDIALGSDPDDRQTAVRNSFWNQFV 477


>At3g19420.1 68416.m02463 expressed protein
          Length = 611

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -2

Query: 387 SGSEGNFTQQRTYSVAKGESCSVPTGSAANLVMSNVSRF 271
           SG++G+    +  +V+KGE+   P+G+  N   S+ S F
Sbjct: 552 SGNKGSSQPVQGVTVSKGEATEKPSGAGVNASSSSESEF 590


>At2g35155.1 68415.m04312 expressed protein
          Length = 579

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 3/29 (10%)
 Frame = +3

Query: 132 HPLPGSYAPRK--GAI-CAARFTADDQWY 209
           HPLP S  P    GA+  A  F  DDQWY
Sbjct: 260 HPLPPSLGPGVYLGAVERATSFITDDQWY 288


>At2g01940.1 68415.m00129 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 439

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 614 RAPERPRYSAINVASRLSRTCSTNTSPS 531
           R P RP  +A+ V +  SRT ST ++PS
Sbjct: 200 REPPRPPQTAVTVPACSSRTASTVSTPS 227


>At1g29540.1 68414.m03613 hypothetical protein
          Length = 161

 Score = 23.4 bits (48), Expect(2) = 8.8
 Identities = 13/56 (23%), Positives = 24/56 (42%)
 Frame = -3

Query: 677 FHCIVLGDVTVPPQVEVASSWRAPERPRYSAINVASRLSRTCSTNTSPSLIRFLPR 510
           +H ++L +  V P  ++ +     E P  +  N   ++ R C  N    + R  PR
Sbjct: 3   YHKLMLREKNVKPTYQIFNIMATKENPPKAQSNTDPKIMRRCK-NLLIRITRSCPR 57



 Score = 22.6 bits (46), Expect(2) = 8.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 437 SCQRHHYRN 411
           SC RHHYR+
Sbjct: 54  SCPRHHYRH 62


>At5g45070.1 68418.m05527 disease resistance protein (TIR class),
           putative domain signature TIR exists, suggestive of a
           disease resistance protein.
          Length = 354

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = -1

Query: 451 IQEQPLANDIIIETGYSFCSVIRVRGEFHTAENILCRKRRIV 326
           I ++P   DI I T  +  ++I++ G+FHT + I  +K  +V
Sbjct: 221 IYDRPHKADIEIATMINTHALIKISGDFHTRKLIPGKKYEVV 262


>At3g61070.1 68416.m06835 peroxisomal biogenesis factor 11 family
           protein / PEX11 family protein contains Pfam PF05648:
           Peroxisomal biogenesis factor 11 (PEX11)
          Length = 231

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = +3

Query: 192 ADDQWYRAKIEKITDNRQVQVYTSTMEI 275
           ADD+ YRAK++K  D R + +  S+M+I
Sbjct: 161 ADDELYRAKLQKSND-RTLALIKSSMDI 187


>At2g19810.1 68415.m02316 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 359

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +3

Query: 549 GAGS*QPTGDIDGRVSRPLRSTPRARDF-NLWRHGDITEDDAVE 677
           G+G   P G + G   R L +TP    F N+W +G + E+ A+E
Sbjct: 270 GSGFGSPRGSVLGPGFRSLPTTPTRPGFMNIWENG-LEEEPAME 312


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,831,113
Number of Sequences: 28952
Number of extensions: 380923
Number of successful extensions: 999
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)