Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120385.Seq
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    32   0.096
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    27   2.1  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    27   2.1  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    27   3.6  
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    27   3.6  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    26   6.3  
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos...    26   6.3  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   8.4  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 31.9 bits (69), Expect = 0.096
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
 Frame = -3

Query: 185 SLIVNGFKYNQVD--------DHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYA 42
           +L   GF YN +         D+V C  C     +W +D+     H+T SP C +A
Sbjct: 43  TLATVGFYYNPISESNSEERLDNVTCYMCTKSFYDWEDDDDPLKEHITHSPSCPWA 98



 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
 Frame = -3

Query: 182 LIVNGFKYN---QVDDHVVCEYCEAEIKNWSEDE 90
           +  +GF YN      D   C YC+  + +W  D+
Sbjct: 144 MAASGFVYNPTADAKDAAHCLYCDINLHDWEPDD 177


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/38 (39%), Positives = 23/38 (60%)
 Frame = -1

Query: 715 TALLFSMCVDNAFAYTTDDLLKNISFSHSKCAPFRLQN 602
           T+L+FS+ +D    +  + LLK  S+S S   PF L+N
Sbjct: 99  TSLIFSLVIDLVGVHV-NKLLKQASYSSSFKLPFGLRN 135


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 275 RQHRRTRFDMLLERHGSFENYPIVNTAFI 189
           + HR  +F  LLE   +F +YP  + AFI
Sbjct: 408 KPHRYWKFTALLEASATFISYPFQSLAFI 436


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -1

Query: 664 DDLLKNISFSHSKCAPFRLQNYTVLKRLSNGFIDKSVDV 548
           +D+L +I     K  PF L+    ++ L+ G IDK + +
Sbjct: 267 EDVLNDIELKIYKIRPFNLEKCINMRDLNPGDIDKLISI 305


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
 Frame = -3

Query: 401 GHINVSLNQNDPNVLILTVTLTS*NERGHSSVLFYQHARQ-LSRQHRRTRFDMLLERHGS 225
           GHI +S    D  +    VT    N   H+ V      R  L+++ RR  +  LLE++ +
Sbjct: 297 GHIKLS----DFGLSTAIVTSNQVNRLQHALVSAVNPQRPYLTQKQRRNIYKALLEKNEN 352

Query: 224 FENYPIVNTAFINSLIVNGFKYNQVDDH 141
             N  + +  ++   +V G KY++  D+
Sbjct: 353 KVNSVVGSPEYMAPEVVYGKKYDRTVDY 380


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
 Frame = +3

Query: 465  KLVLENV*YVAG*PIILKLNFCNSLIEPTSTDLSINPLLNRFKTV*FCSLKGAHLE*LKE 644
            K++L +  ++A   I++KL  C+S I    +   I+PL+       FC  +G   + L  
Sbjct: 978  KILLTSFTHLAVDNILIKLKGCDSTIVRLGSPHKIHPLVKE-----FCLTEGTTFDDLAS 1032

Query: 645  I--FFNKSSVVYANALST-HMLNNR 710
            +  F+    +V  ++L   H + N+
Sbjct: 1033 LKHFYEDPQIVACSSLGVYHSIFNK 1057


>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
           Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +2

Query: 440 WINYVLKLQTRTRKCLICSWLADYLKIKLLQLADRAHVHRLVDKPVAQPLQ 592
           W   V K+Q   +K ++ S L +YL I++ +        + +D P+   LQ
Sbjct: 287 WHCPVCKVQRSAKKVIMISKLPEYLIIQIQRFKISVMGRKKIDTPLGLSLQ 337


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 602 LHRFEAVEQRVYRQVC 555
           LH FE    RVY Q+C
Sbjct: 180 LHDFETTSNRVYSQIC 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,841,266
Number of Sequences: 5004
Number of extensions: 55829
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)