Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120385.Seq
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0632 + 18200844-18200970,18201134-18201190,18201370-182014...    31   1.2  
05_04_0402 - 20991628-20991755,20992461-20992578,20992670-209927...    29   3.8  
11_01_0607 - 4837257-4837447,4837526-4837631,4837913-4838005,483...    28   6.6  
03_06_0715 + 35693002-35694585                                         28   6.6  
01_06_1512 + 37881055-37881229,37881388-37881444,37881537-378816...    28   6.6  
05_04_0366 - 20663243-20663388,20663467-20663572,20664275-206643...    28   8.7  
01_06_1567 + 38293612-38293795,38294467-38294523,38294609-382946...    28   8.7  

>04_03_0632 +
           18200844-18200970,18201134-18201190,18201370-18201460,
           18201545-18201705,18202176-18202303,18202386-18202523,
           18202966-18203058,18203546-18203704
          Length = 317

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +3

Query: 81  FNTLVFGPIFYFCFTILAHNVIVDLIVFK 167
           FNT V  P++Y  FTIL   +I ++I++K
Sbjct: 239 FNTAVVSPVYYVMFTIL--TIIANMIMYK 265


>05_04_0402 -
           20991628-20991755,20992461-20992578,20992670-20992762,
           20992841-20992978,20993070-20993197,20993270-20993430,
           20993548-20993638,20993731-20993787,20993986-20994139
          Length = 355

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +3

Query: 81  FNTLVFGPIFYFCFTILAHNVIVDLIVFKPVNDQAV 188
           FNT V  PI+Y  FT L   ++   I+FK  + Q++
Sbjct: 248 FNTAVVSPIYYAMFTSL--TILASAIMFKDWSGQSI 281


>11_01_0607 -
           4837257-4837447,4837526-4837631,4837913-4838005,
           4838405-4838542,4838651-4838778,4838889-4839049,
           4839145-4839235,4841437-4841602
          Length = 357

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 81  FNTLVFGPIFYFCFTILAHNVIVDLIVFK 167
           FNT V  PI+Y  FT L   ++  +I+FK
Sbjct: 233 FNTAVVSPIYYVMFTSL--TILASVIMFK 259


>03_06_0715 + 35693002-35694585
          Length = 527

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
 Frame = -3

Query: 311 SVLFYQHARQLSRQHRRTRFDMLLERH---GSFENYPIVNTAFINSLIVNG 168
           S LFY+  RQL        FD+   RH   G   NY +V   + +  ++ G
Sbjct: 208 STLFYRSLRQLKYAGNFHPFDLAFRRHCAEGKLPNYVVVEQRYFDLKMLPG 258


>01_06_1512 +
           37881055-37881229,37881388-37881444,37881537-37881627,
           37881759-37881919,37882002-37882129,37882215-37882352,
           37882665-37882757,37882858-37882975,37883064-37883194
          Length = 363

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 81  FNTLVFGPIFYFCFTILAHNVIVDLIVFKPVNDQAVDK 194
           FN  V  PI+Y  FT L   ++   I+FK  + Q+  K
Sbjct: 255 FNAAVVSPIYYAMFTTL--TILASAIMFKDWSGQSASK 290


>05_04_0366 -
           20663243-20663388,20663467-20663572,20664275-20664367,
           20664520-20664657,20664759-20664886,20664996-20665156,
           20665277-20665367,20665460-20665516,20666288-20666444
          Length = 358

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 81  FNTLVFGPIFYFCFTILAHNVIVDLIVFK 167
           FNT V  PI+Y  FT L   ++  +I+FK
Sbjct: 249 FNTAVVSPIYYTMFTSL--TILASVIMFK 275


>01_06_1567 +
           38293612-38293795,38294467-38294523,38294609-38294699,
           38294799-38294959,38295045-38295172,38295291-38295428,
           38295717-38295809,38298219-38298324,38298393-38298517
          Length = 360

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +3

Query: 81  FNTLVFGPIFYFCFTILAHNVIVDLIVFK 167
           FNT V  PI+Y  FT L   ++  +I+FK
Sbjct: 258 FNTAVVSPIYYTMFTSL--TILASVIMFK 284


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,062,060
Number of Sequences: 37544
Number of extensions: 311472
Number of successful extensions: 692
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)