Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120385.Seq
         (730 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39662| Best HMM Match : BIR (HMM E-Value=1.2e-19)                   34   0.14 
SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)                   33   0.24 
SB_8042| Best HMM Match : DUF803 (HMM E-Value=0)                       29   3.9  
SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31)                   29   5.1  
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)                28   6.7  
SB_51823| Best HMM Match : zf-CCHC (HMM E-Value=0.00023)               28   8.9  
SB_32997| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_39662| Best HMM Match : BIR (HMM E-Value=1.2e-19)
          Length = 314

 Score = 33.9 bits (74), Expect = 0.14
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = -3

Query: 227 SFENYPIVNTAFINSLIVNGFKYNQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYC 51
           +F  +P  ++A +  L   GF +   DD V C  C+  +K W  D+    +H    P C
Sbjct: 141 TFNFWPATSSANVFELARAGFVFTGRDDVVECFKCKGTLKQWKVDDRPIESHREFYPDC 199


>SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)
          Length = 514

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
 Frame = -3

Query: 269 HRRTRFDMLLERHG--SFENYPIVNTAFINSLIVNGFKYNQVDDHVVCEYCEAEIKNWSE 96
           H  +  D+  E H   +F ++P  +      L   GF Y    D V C  C   ++NW  
Sbjct: 121 HVTSPTDLQSEHHRLTTFVDWPESSPVRPWELSSAGFYYLGDQDSVKCYKCGVALRNWEP 180

Query: 95  DECIEYAHVTLSPYC 51
           D+     H   SP+C
Sbjct: 181 DDLPWVEHEKWSPHC 195


>SB_8042| Best HMM Match : DUF803 (HMM E-Value=0)
          Length = 603

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 78  IFNTLVFGPIFYFCFTILAHNVIVDLIVFK 167
           IFNT +  PI+Y  FT+L   +I   I+FK
Sbjct: 485 IFNTSLVTPIYYVMFTLL--TIIASAILFK 512


>SB_38674| Best HMM Match : TIR (HMM E-Value=2.5e-31)
          Length = 870

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 21/69 (30%), Positives = 36/69 (52%)
 Frame = -1

Query: 712 ALLFSMCVDNAFAYTTDDLLKNISFSHSKCAPFRLQNYTVLKRLSNGFIDKSVDVGSISE 533
           A+ F   +D   + T D L  N+  S S  +  +L++  V   L+N  I  S+D+GS+++
Sbjct: 344 AITFGGILDVLDSVTADQLFYNLRRSASS-SDNQLKSTKVELNLANNGIS-SIDIGSLNK 401

Query: 532 LQKFNFKII 506
            Q    K+I
Sbjct: 402 TQLGKLKVI 410


>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
          Length = 2059

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 416 TKTKLGHINVSLNQNDPNVLILTVTL 339
           TKT L  +     +NDPNVL +TV L
Sbjct: 760 TKTALSTVQCCSLENDPNVLAITVIL 785


>SB_51823| Best HMM Match : zf-CCHC (HMM E-Value=0.00023)
          Length = 382

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -3

Query: 305 LFYQHARQLSRQHRRTRFDMLLERHGSFENYPIVNTAFINSLIVNGFKYNQ--VDDHVVC 132
           +F+    +   ++ +T  D L +     +N P+   AF+ ++   G + +Q  +    +C
Sbjct: 90  IFHAFTAEQQGENYKTAMDSLTQHFKLKKNVPMARQAFLTAVPKPGERIHQFAIRLQTLC 149

Query: 131 EYCE 120
           E+CE
Sbjct: 150 EHCE 153


>SB_32997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 553

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 264 PNTFRHVTRKTWLV*KLSHCKHGVYQQL 181
           PN  R VTR T ++  L+HCK   ++ +
Sbjct: 301 PNIIRIVTRSTMIMQYLAHCKEDSFEPI 328


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,834,674
Number of Sequences: 59808
Number of extensions: 397884
Number of successful extensions: 1104
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)