Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120385.Seq
         (730 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68014-4|CAA92026.2|  588|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z29094-16|CAA82345.2|  184|Caenorhabditis elegans Hypothetical p...    28   7.9  

>Z68014-4|CAA92026.2|  588|Caenorhabditis elegans Hypothetical
           protein W04G3.4 protein.
          Length = 588

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 491 ISNIFEYEFVVLEHNLSTVHVINAETKTKLGHINVSLNQNDPNV 360
           +SNI  Y  V+  HN  T+  +N   KT   ++ + L  +  N+
Sbjct: 484 VSNIHSYVLVIQNHNNFTIKDVNLSLKTNDKNVIIRLQDSVNNL 527


>Z29094-16|CAA82345.2|  184|Caenorhabditis elegans Hypothetical
           protein C07A9.9 protein.
          Length = 184

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
 Frame = -3

Query: 164 KYNQVDDHVV----CEYCEAEIKNWSEDECIEYAHVTLSPYCAY 45
           +Y  VDD V     C +C      W  D+C +  H +L  +C Y
Sbjct: 59  EYQYVDDDVPNSERCHFCMKRKGRWMGDDCSD--HSSLCKHCCY 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,702,107
Number of Sequences: 27780
Number of extensions: 310259
Number of successful extensions: 810
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)