Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120385.Seq
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.9  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   5.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   5.2  
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      22   5.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 7/24 (29%), Positives = 17/24 (70%)
 Frame = +2

Query: 449 YVLKLQTRTRKCLICSWLADYLKI 520
           Y ++  +   KC++ S++AD++K+
Sbjct: 113 YAIRGNSAILKCVVPSFVADFVKV 136


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 595 VLKRLSNGFIDKSVDVGSISELQKFN 518
           ++  L  G I + +  GSISE QKF+
Sbjct: 413 IVSGLITGLIMRVLICGSISEEQKFD 438


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = +2

Query: 200 CLQWDNFQTS 229
           CL+W+N+Q+S
Sbjct: 8   CLRWNNYQSS 17


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = +2

Query: 200 CLQWDNFQTS 229
           CL+W+N+Q+S
Sbjct: 8   CLRWNNYQSS 17


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,919
Number of Sequences: 438
Number of extensions: 3645
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)