Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120385.Seq
(730 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g38730.1 68417.m05486 expressed protein 30 1.8
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 29 4.2
At4g09640.1 68417.m01584 expressed protein several hypothetical ... 29 4.2
At1g31540.1 68414.m03869 disease resistance protein (TIR-NBS-LRR... 29 4.2
At1g04050.1 68414.m00392 SET domain-containing protein / suppres... 29 4.2
At5g46270.1 68418.m05696 disease resistance protein (TIR-NBS-LRR... 28 5.5
At4g12670.1 68417.m01991 expressed protein ; expression support... 28 5.5
At3g23870.1 68416.m03000 permease-related low similarity to puri... 28 5.5
At1g34470.1 68414.m04283 permease-related low similarity to puri... 28 5.5
At5g02350.1 68418.m00158 DC1 domain-containing protein contains ... 28 7.3
At1g71900.1 68414.m08312 expressed protein 28 7.3
At5g09410.1 68418.m01090 calmodulin-binding protein similar to a... 27 9.6
At4g13800.1 68417.m02139 permease-related contains 9 predicted t... 27 9.6
>At4g38730.1 68417.m05486 expressed protein
Length = 326
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 81 FNTLVFGPIFYFCFTILAHNVIVDLIVFKPVNDQAVD 191
FN + PI+Y FT L ++ I+FK N Q D
Sbjct: 237 FNAAIVSPIYYVMFTTL--TIVASAIMFKDWNGQNTD 271
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -1
Query: 706 LFSMCVDNAFA-YTTDDLLKNISFSHSKCAPFRLQNYTVLKRLSNGFI 566
+FS+ +N FA D LLK +S + K P++ Q V ++ S+G I
Sbjct: 1644 VFSLLDENIFAGMNKDQLLKKLSNTVVKDLPYKCQKIVVTEQDSSGCI 1691
>At4g09640.1 68417.m01584 expressed protein several hypothetical
proteins - Arabidopsis thaliana
Length = 386
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 81 FNTLVFGPIFYFCFTILAHNVIVDLIVFKPVNDQA 185
FNT V PI+Y FT L ++ +I+FK + Q+
Sbjct: 251 FNTAVVSPIYYVMFTSL--TILASVIMFKDWDRQS 283
>At1g31540.1 68414.m03869 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 776
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 510 ILKLNFCNSLIEPTSTDLSINPLLN 584
IL L FC SL+E S+ ++N LLN
Sbjct: 655 ILNLKFCESLVELPSSIRNLNKLLN 679
>At1g04050.1 68414.m00392 SET domain-containing protein / suppressor
of variegation related 1 (SUVR1) identical to suppressor
of variegation related 1 [Arabidopsis thaliana]
GI:15004614; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA trithorax 3
(ATX3) partial cds GI:15217142
Length = 630
Score = 28.7 bits (61), Expect = 4.2
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = -1
Query: 691 VDNAFAYTTDDLLKNISFSHSKCAPFRLQNYTVLK 587
VDN FAYT D LLK F ++ + R Q VL+
Sbjct: 377 VDNGFAYTLDGLLKE-EFLEARISEARDQRKQVLR 410
>At5g46270.1 68418.m05696 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1145
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 510 ILKLNFCNSLIEPTSTDLSINPLL 581
ILKL FC SL+E S+ ++N LL
Sbjct: 654 ILKLGFCKSLVELPSSIRNLNKLL 677
>At4g12670.1 68417.m01991 expressed protein ; expression supported
by MPSS
Length = 520
Score = 28.3 bits (60), Expect = 5.5
Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Frame = -3
Query: 443 STVHVINAETKTKLGHINVSLNQNDPNVLILTVTLTS*NERG------HSSVLFYQHARQ 282
STV + ++ + + + N NDPNV + L + G + L +++
Sbjct: 325 STVEQVERKSVSSISSPESTNNVNDPNVAFQELALIIHPKAGVQEQPIEARPLRSVSSKK 384
Query: 281 LSRQHRRTRFDMLLERHGSFENYPIVNTAFINSLIVNGFK 162
S Q + LE++G N P FI + +V GFK
Sbjct: 385 PSFQPEKYGHKSYLEKNGPASNDPAQRFLFIWNFLVTGFK 424
>At3g23870.1 68416.m03000 permease-related low similarity to purine
permease [Arabidopsis thaliana] GI:7620007; contains 9
predicted transmembrane domains; contains Pfam PF05653:
Protein of unknown function (DUF803); identified as
COG0697, Permeases of the drug/metabolite transporter
(DMT) superfamily
Length = 335
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 81 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 167
FNT V P++Y FT +I +I+FK
Sbjct: 240 FNTAVISPVYYVMFT--TFTIIASMIMFK 266
>At1g34470.1 68414.m04283 permease-related low similarity to purine
permease [Arabidopsis thaliana] GI:7620007
Length = 368
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 81 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 167
FNT V PI+Y FT L ++ +I+FK
Sbjct: 251 FNTAVVSPIYYVMFTSL--TILASVIMFK 277
>At5g02350.1 68418.m00158 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 651
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = -3
Query: 149 DDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIAEHESFG 12
D++++C+ C I + C++ L CA A++ +H G
Sbjct: 388 DENIICQACILPIYEGNYYSCMDQCDFVLHEACANASRKKDHALHG 433
>At1g71900.1 68414.m08312 expressed protein
Length = 343
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 81 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 167
FNT + PI+Y FT L ++ +I+FK
Sbjct: 251 FNTAIVSPIYYVMFTSL--TILASVIMFK 277
>At5g09410.1 68418.m01090 calmodulin-binding protein similar to anther
ethylene-upregulated calmodulin-binding protein ER1
GI:11612392 from [Nicotiana tabacum]
Length = 1007
Score = 27.5 bits (58), Expect = 9.6
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Frame = -3
Query: 299 YQHARQLSRQHRRTRFDMLLERHGSFENYPIVNTAFINSL-IVNGFKYNQVDDHVVCEYC 123
Y + ++ R+ R L R S YP + L +V GF+ N+
Sbjct: 919 YDYLKE-GRKQTEERLQKALTRVKSMVQYPEARDQYRRLLTVVEGFRENEASSSASINNK 977
Query: 122 EAEIKNWSEDECIE 81
E E N ED+ I+
Sbjct: 978 EEEAVNCEEDDFID 991
>At4g13800.1 68417.m02139 permease-related contains 9 predicted
transmembrane domains; contains Pfam PF05653: Protein of
unknown function (DUF803); identified as COG0697,
Permeases of the drug/metabolite transporter (DMT)
superfamily
Length = 336
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 81 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 167
FNT V P++Y FT ++ +I+FK
Sbjct: 240 FNTAVISPVYYVMFT--TFTILASMIMFK 266
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,304,684
Number of Sequences: 28952
Number of extensions: 271371
Number of successful extensions: 654
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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