Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120384.Seq
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    77   2e-15
SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac...    30   0.32 
SPCC4G3.08 |psk1||serine/threonine protein kinase Psk1|Schizosac...    28   1.3  
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom...    25   9.0  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 77.4 bits (182), Expect = 2e-15
 Identities = 35/61 (57%), Positives = 42/61 (68%)
 Frame = +3

Query: 510 LFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FFGHPE 689
           LF  A+ IT+          AG + +L +DRNLNTSF+ P GGGDP+LYQHLF FFGHPE
Sbjct: 190 LFAWAIMITSILLLLTLPVLAGGLFMLFSDRNLNTSFYAPEGGGDPVLYQHLFWFFGHPE 249

Query: 690 V 692
           V
Sbjct: 250 V 250



 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 29/63 (46%), Positives = 33/63 (52%)
 Frame = +1

Query: 247 PTKNNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 426
           P  NN  F              + E G G G TVYPPLSS  +H G ++DLAI SL L G
Sbjct: 102 PRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSGPAIDLAILSLQLTG 161

Query: 427 ISS 435
           ISS
Sbjct: 162 ISS 164



 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 33/99 (33%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
 Frame = +2

Query: 2   KDIGTLYXXXXXXXXXXXXXXXXXXXAELGNPGS--LIGDDQIYNTIVTAHAXXXXXXXX 175
           KDI  LY                    EL  PGS  L G+ Q+YN  ++AH         
Sbjct: 18  KDIAILYLLFGLVSGIIGSVFSFIIRMELSAPGSQFLSGNGQLYNVAISAHGILMIFFFI 77

Query: 176 XXXXXXXXXN*LVPLILGAPDIAFPRKII*DFDSYPPPL 292
                    N LVPL++GAPD+A+PR     F   PP L
Sbjct: 78  IPALFGAFGNYLVPLMIGAPDVAYPRVNNFTFWLLPPAL 116



 Score = 28.7 bits (61), Expect = 0.97
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 697 LILPGFGIISHIISQERGKKNFG 765
           LI+P FG++SHII     K  FG
Sbjct: 253 LIMPAFGVVSHIIPSLAHKPIFG 275


>SPAC821.12 |orb6||serine/threonine protein kinase
           Orb6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 469

 Score = 30.3 bits (65), Expect = 0.32
 Identities = 14/43 (32%), Positives = 29/43 (67%), Gaps = 3/43 (6%)
 Frame = +1

Query: 625 ILLEEETQFYINIYFDFLDILKLYLI---LPGFGIISHIISQE 744
           +L+E ++ + +++Y+ F D L LYLI   LPG  +++ +I+ +
Sbjct: 144 LLVESDSPWVVSLYYAFQDSLYLYLIMEFLPGGDLMTMLINYD 186


>SPCC4G3.08 |psk1||serine/threonine protein kinase
           Psk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 436

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +1

Query: 625 ILLEEETQFYINIYFDFLDILKLYLIL---PGFGIISHIISQ 741
           IL E    F   +Y+ F D  +LYLIL   PG  + SH+  Q
Sbjct: 143 ILEEVRHPFICRLYYAFQDHDRLYLILQYAPGGELFSHLAEQ 184


>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 762

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 273 TPTPLPYIINFKKNCRKWCRNRMNS 347
           T T   YIINFKKN   + R +++S
Sbjct: 512 TKTTEEYIINFKKNSWLFFRKKIDS 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,572,042
Number of Sequences: 5004
Number of extensions: 45630
Number of successful extensions: 109
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)