Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120384.Seq
         (768 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125954-6|AAD14707.2|  346|Caenorhabditis elegans Serpentine re...    29   3.6  
AC006769-7|AAF60589.1|  346|Caenorhabditis elegans Serpentine re...    29   3.6  
AF039044-4|AAG24122.3|  328|Caenorhabditis elegans Serpentine re...    28   8.4  

>AF125954-6|AAD14707.2|  346|Caenorhabditis elegans Serpentine
           receptor, class t protein1 protein.
          Length = 346

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 621 FDPAGGGDPILYQHLF*FFGHPEVIFNFTRIWYNFSYYFTRK 746
           FDP  G DP LY ++     +P V  + T +++   YY   K
Sbjct: 185 FDPMIGKDPALYVNVLHNINNPIVAISTTFLYFYLCYYLIFK 226


>AC006769-7|AAF60589.1|  346|Caenorhabditis elegans Serpentine
           receptor, class t protein2 protein.
          Length = 346

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 621 FDPAGGGDPILYQHLF*FFGHPEVIFNFTRIWYNFSYYFTRK 746
           FDP  G DP LY ++     +P V  + T +++   YY   K
Sbjct: 185 FDPMIGKDPALYVNVLHNINNPIVAISTTFLYFYLCYYLIFK 226


>AF039044-4|AAG24122.3|  328|Caenorhabditis elegans Serpentine
           receptor, class t protein17 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 597 DRNLNTSFFDPAGGGDPILYQHLF*FFGHPEVIFNFTRIWYNF-SYYFTRKRK 752
           + N ++ F DP  G DP LY++    F +  V    T ++Y + SY + +K K
Sbjct: 187 NENYSSWFTDPGLGHDPALYKNSLIAFNNFAVAI-CTIVFYGYISYVYLKKSK 238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,264,282
Number of Sequences: 27780
Number of extensions: 263446
Number of successful extensions: 593
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 593
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)