Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120382.Seq
         (779 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7RM86 Cluster: Chromodomain-helicase-DNA-binding prote...    37   0.65 
UniRef50_A0CBS4 Cluster: Chromosome undetermined scaffold_165, w...    34   4.6  
UniRef50_Q8IJG6 Cluster: Putative uncharacterized protein; n=1; ...    33   8.0  

>UniRef50_Q7RM86 Cluster: Chromodomain-helicase-DNA-binding protein,
           CHD-1-related; n=4; Plasmodium (Vinckeia)|Rep:
           Chromodomain-helicase-DNA-binding protein, CHD-1-related
           - Plasmodium yoelii yoelii
          Length = 2541

 Score = 36.7 bits (81), Expect = 0.65
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 256 SFTHNLLCKY*IYRHYSGIKRIINYAMKLQTQSKKNNY 143
           S  HN  C Y   R+++G+K++ NY  K++   +K  Y
Sbjct: 764 SHIHNFFCTYEYLRYFNGVKKVDNYIKKIRLSFQKRKY 801


>UniRef50_A0CBS4 Cluster: Chromosome undetermined scaffold_165,
           whole genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_165,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 365

 Score = 33.9 bits (74), Expect = 4.6
 Identities = 12/44 (27%), Positives = 27/44 (61%)
 Frame = -1

Query: 368 ILYFIKDNNNFITSYFSFHTYLHSNLHYFHINCASPTFVYTQPI 237
           +L+F K +NN  T + +F  Y+ ++  Y     A+P+F++++ +
Sbjct: 236 LLWFFKSSNNGCTEFGAFTPYIWNDSQYSGATAANPSFIFSKTL 279


>UniRef50_Q8IJG6 Cluster: Putative uncharacterized protein; n=1;
            Plasmodium falciparum 3D7|Rep: Putative uncharacterized
            protein - Plasmodium falciparum (isolate 3D7)
          Length = 3328

 Score = 33.1 bits (72), Expect = 8.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -2

Query: 256  SFTHNLLCKY*IYRHYSGIKRIINYAMKLQTQSKKNNY 143
            S  HN  C Y   +++ GIK++ NY  K++   +K  +
Sbjct: 1142 SHIHNFFCTYDYLKNFHGIKKVDNYIKKIRQSFQKRKF 1179


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 677,157,124
Number of Sequences: 1657284
Number of extensions: 12548711
Number of successful extensions: 26172
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 25203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26164
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65850543200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)