Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120382.Seq
         (779 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     23   2.1  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    23   2.1  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           23   2.1  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    23   2.7  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   4.8  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
 Frame = -1

Query: 347 NNNFITSYFSFHTYLHSNLHY-----FHINCASPTFVYTQPIM*ILNLQ 216
           N+N +++ + +  Y H  LH       H     P    TQP+   LN Q
Sbjct: 71  NSNVLSNGYGYGNYYHPQLHSHHGPPIHHQIRPPILHDTQPMCESLNTQ 119


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
 Frame = -1

Query: 347 NNNFITSYFSFHTYLHSNLHY-----FHINCASPTFVYTQPIM*ILNLQ 216
           N+N +++ + +  Y H  LH       H     P    TQP+   LN Q
Sbjct: 71  NSNVLSNGYGYGNYYHPQLHSHHGPPIHHQIRPPILHDTQPMCESLNTQ 119


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
 Frame = -1

Query: 347 NNNFITSYFSFHTYLHSNLHY-----FHINCASPTFVYTQPIM*ILNLQ 216
           N+N +++ + +  Y H  LH       H     P    TQP+   LN Q
Sbjct: 71  NSNVLSNGYGYGNYYHPQLHSHHGPPIHHQIRPPILHDTQPMCESLNTQ 119


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -1

Query: 347 NNNFITSYFSFHTYLHSNLHYFH 279
           N+N +++ + +  Y H  LH  H
Sbjct: 71  NSNVLSNGYGYGNYYHPQLHSHH 93


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = -1

Query: 377 LTIILYFIKDNNNFITSYFSFHTYLHSNLHYFHINCASPTFVY 249
           LT  +      +NF   + +++  L+ +   FHIN A    +Y
Sbjct: 311 LTFWIIVAPAGSNFEIGFENYYNILYFSRIMFHINSAVNPILY 353


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,072
Number of Sequences: 336
Number of extensions: 3726
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21065107
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)