Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120382.Seq
         (779 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37712| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.0  
SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17)                  28   9.8  

>SB_37712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 537

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 22/80 (27%), Positives = 36/80 (45%)
 Frame = +2

Query: 449 YCLMYFDFEKEI*FWTQCD*FYQVLAILRLPIGALCQLRTNLS*LLRGREVKKLARSTVP 628
           Y   Y  F   +  W Q    Y+ L  +  P   LC+    +  +L G+ V K    + P
Sbjct: 212 YKYSYSSFSNIMSSWCQ----YEALKFVSFPTQVLCKASKIIPVMLMGKLVSK---KSYP 264

Query: 629 YFTIC*YVILSLAVNVFIRS 688
           Y+     V+LS+ V++F+ S
Sbjct: 265 YYEYFIAVVLSVGVSLFLLS 284


>SB_18836| Best HMM Match : C1_1 (HMM E-Value=7.3e-17)
          Length = 1440

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 8/16 (50%), Positives = 14/16 (87%)
 Frame = +1

Query: 202 YQNSVCKFNIYIIGCV 249
           YQ S+C+FN++ +GC+
Sbjct: 268 YQCSICEFNVHKVGCL 283


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,803,812
Number of Sequences: 59808
Number of extensions: 383385
Number of successful extensions: 609
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)