Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120382.Seq
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    25   0.60 
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    24   1.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.6  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.6  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   5.6  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 25.4 bits (53), Expect = 0.60
 Identities = 7/26 (26%), Positives = 17/26 (65%)
 Frame = -1

Query: 314 HTYLHSNLHYFHINCASPTFVYTQPI 237
           H+++H+  H+ H + A+P   ++ P+
Sbjct: 423 HSHIHATPHHHHSHAATPHHQHSTPL 448


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +1

Query: 94  KVIKIHYRRSIEINTNGNYFFCFEFVISLRNLLSF*YQNSVCKFNI 231
           K+    Y+RS+   +N N F     V    N ++  Y N  C  NI
Sbjct: 447 KINNHEYKRSVSRESNSNQFILMTTVNEGNNNMAATYMNE-CLLNI 491


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 420 YVIFLINLVNIALCTLILKKRYNF 491
           Y+IF + LV+I++C  ++    +F
Sbjct: 310 YLIFAMILVSISICVTVVVLNVHF 333


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 420 YVIFLINLVNIALCTLILKKRYNF 491
           Y+IF + LV+I++C  ++    +F
Sbjct: 310 YLIFAMILVSISICVTVVVLNVHF 333


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 489 FGHNVTSSTKF 521
           FGHNVT + KF
Sbjct: 607 FGHNVTLANKF 617


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,679
Number of Sequences: 438
Number of extensions: 4253
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)