Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120382.Seq
         (779 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g17400.1 68414.m02124 hypothetical protein                          31   0.65 

>At1g17400.1 68414.m02124 hypothetical protein
          Length = 310

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -2

Query: 766 SRPPLATTTGRFSDDSIQCSLK-RDWETPDKHVYSEGENYVLANSKVRYGTSCEFFNFST 590
           S  P + TT R+  D  Q SLK  + ET ++   S+G  +V  +S   + +   +F FS 
Sbjct: 241 SSKPTSLTTKRYLQDKKQLSLKSEEEETSERRSSSDGYKWVKTDSDCEFSSDPHYF-FSK 299

Query: 589 A*KLT 575
             K T
Sbjct: 300 TQKQT 304


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,596,117
Number of Sequences: 28952
Number of extensions: 270856
Number of successful extensions: 505
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 505
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)