Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120381.Seq
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom...    29   0.48 
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    26   4.5  
SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase S...    26   5.9  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    26   5.9  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   7.9  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    25   7.9  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    25   7.9  

>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 29.5 bits (63), Expect = 0.48
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +1

Query: 19  HRVDIINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLT 174
           HR+DI++  Q  +      L+   K Q  +N+ ++ K + EK + L  DN++
Sbjct: 59  HRIDILSAIQSMKKQQKDKLQQENKDQELKNIEESYKKLEEKTEHLSDDNVS 110


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/40 (27%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
 Frame = +1

Query: 19  HRVD--IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKS 132
           HR++  ++  ++ E++  +S L++L+  Q+D N   N+K+
Sbjct: 735 HRLEELLLGNNEIEEIEEISSLQNLMVLQLDNNKLTNLKA 774


>SPAC23H4.17c |srb10|prk1, cdk8|cyclin-dependent protein kinase
           Srb10 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 352

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = +2

Query: 413 PVKIFVAATAEQKL----LLKKTRDALLPFYKYISIVKTV 520
           P  I + AT + K+    L +  RD +LPFY    +V T+
Sbjct: 143 PANIMITATGKVKIGDLGLGRLIRDPILPFYSSDRVVVTI 182


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -1

Query: 672 NFEAFFCYRFQTQNYQRIAMKSVIFVGFEIFNILLIFNN 556
           +F A    + +    QR A++S  + G+E F+   +F N
Sbjct: 134 SFVAELAEKLEMPRIQRFALESSFYTGYEPFDAERVFTN 172


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +1

Query: 49   FEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 186
            F+ L+++  LKS+ +TQ+D    + +  M+  L     D+L  S+E
Sbjct: 3741 FKHLVSLQSLKSISRTQVDLTNDEFLNLMNFVLNLF--DSLLSSIE 3784


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 145 LKRLECDNLTDSVEIYGIHDNRLNN 219
           LK LECD L  S+E+   H  + ++
Sbjct: 3   LKCLECDKLLSSIEMAEFHSTKTSH 27


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -1

Query: 108 FVDLRFDQRLEQRHVNQLFKLIHINYINPMRIWC 7
           F   RF+Q+  +R   +   L + N I PM+++C
Sbjct: 586 FKSYRFNQQFVERVPLKYRSLTYSNKIEPMKVFC 619


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,364,808
Number of Sequences: 5004
Number of extensions: 43504
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)