Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120381.Seq
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_05_0028 - 18468407-18468859,18469070-18469228,18469361-18470227     30   2.0  
07_03_0532 + 19171290-19171394,19173122-19173302,19173761-191742...    28   6.1  
04_03_0265 - 13638816-13641348,13641432-13641490                       28   6.1  
10_06_0140 + 11147019-11147791,11148301-11150524                       28   8.1  
04_01_0106 + 1102880-1105691,1105781-1105806                           28   8.1  
02_04_0619 - 24481641-24482291,24482426-24482640,24482770-244831...    28   8.1  

>11_05_0028 - 18468407-18468859,18469070-18469228,18469361-18470227
          Length = 492

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 566 FLTINTRLFSSRLTITPFLQWKC-ICKTATERHE 468
           FLT++TR++  +  I  F+ W C I  T  +R E
Sbjct: 401 FLTLDTRIYGFKYEIRRFISWDCGIMMTTDDRME 434


>07_03_0532 +
           19171290-19171394,19173122-19173302,19173761-19174245,
           19174877-19176283,19176413-19176628
          Length = 797

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/68 (26%), Positives = 32/68 (47%)
 Frame = +1

Query: 28  DIINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEIYGIHDN 207
           DI  MD F ++  ++   S  K++ ++  S  +  + EK+KRL  +   D  +       
Sbjct: 314 DIGMMDDFLEMEKIASANSPSKSEAEDAASVQLVKLEEKIKRLAMEK-ADREKALHEAQR 372

Query: 208 RLNNTKIR 231
            L NT+ R
Sbjct: 373 ELRNTRHR 380


>04_03_0265 - 13638816-13641348,13641432-13641490
          Length = 863

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/38 (42%), Positives = 16/38 (42%)
 Frame = -3

Query: 400 NV*IKIFKSTSRDMVCHSLARVASHNLATMWFLSNEDS 287
           NV I I    S DMV H    V       MW L NE S
Sbjct: 771 NVLIDIIDKKSTDMVSHHQEEVIKMLKLAMWCLQNESS 808


>10_06_0140 + 11147019-11147791,11148301-11150524
          Length = 998

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
 Frame = +1

Query: 499 HFHCKNGVMVRRD--EKSRVFIVKNEQNIEYLKANKYYAFHSDT------LIILSLKTIA 654
           H H  N V+  R+  E  R F+V ++   EY  ++   AF SDT      ++  ++++IA
Sbjct: 240 HCHASNLVVNLRNCLESKRFFVVIDDMQREYWNSSFRNAFPSDTGLSSIVIVTTAIQSIA 299

Query: 655 KKC 663
             C
Sbjct: 300 NAC 302


>04_01_0106 + 1102880-1105691,1105781-1105806
          Length = 945

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
 Frame = +1

Query: 37  NMDQFEQLINVSLLKSLIKTQIDE--NVSDNIKSMSEK---LKRLECDNL------TDSV 183
           N D+ +Q+IN   ++S    Q+D   +V  N++ +S     LK LE  N+       D  
Sbjct: 547 NYDRVQQIINAQRIRSFYPYQLDSDYSVMSNVQWVSTSARYLKVLELSNIPITTLPRDIG 606

Query: 184 EIYGIHDNRLNNTKIR 231
            ++ +H   L  TK++
Sbjct: 607 SLFNLHYLGLRRTKVK 622


>02_04_0619 -
           24481641-24482291,24482426-24482640,24482770-24483154,
           24483170-24483258,24485488-24485622,24485833-24487108
          Length = 916

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 371 GRLKNFNLNINYDGPVKIFVAATAEQKLLLKKTRDALLPFY 493
           G+L  F L +N+DG + I+V A  +Q    + T D ++  Y
Sbjct: 824 GKLPPFTLPVNHDGYMHIYVYAYQDQLDDARHTPDGVISDY 864


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,852,471
Number of Sequences: 37544
Number of extensions: 234027
Number of successful extensions: 516
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)