Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120381.Seq
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49691| Best HMM Match : E-MAP-115 (HMM E-Value=4.7)                 29   2.7  
SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_20297| Best HMM Match : LCCL (HMM E-Value=9.7)                      28   8.3  
SB_19730| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_17067| Best HMM Match : TP2 (HMM E-Value=4.1)                       28   8.3  

>SB_49691| Best HMM Match : E-MAP-115 (HMM E-Value=4.7)
          Length = 170

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +1

Query: 40  MDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEIYG 195
           M+  +Q + +S +  +  T  DEN+ DN+    E+ +   C+ L   +  +G
Sbjct: 97  MEAMKQYVPLSNMGFITGTDEDENMPDNVDYKGERRRMAICEELEREIFFWG 148


>SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1182

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
 Frame = +1

Query: 19   HRVDIINMDQFEQLINVSLLKSLIKTQID--ENVSDNI-KSMSEKLKRLECDNLTDSVEI 189
            H+ + +++ Q   L+ V L+ S ++T I+    V D   KS  E + ++ C       E 
Sbjct: 811  HQAETLSVIQSLILVFVKLMNSQLETTIEFLSGVPDPTGKSALENILKIWCAR---QPEF 867

Query: 190  YGIHDNRLNNTKIRN 234
            YG++DN+++   + N
Sbjct: 868  YGVYDNKVSTLALCN 882


>SB_20297| Best HMM Match : LCCL (HMM E-Value=9.7)
          Length = 100

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = +1

Query: 502 FHCKNGVMVRRDEKSRVFIVKNEQNIEYLKANKYYAFHSDTLIILSLKT 648
           ++ +NG+  +R +K +V  V++  N+E    N   +  S+ + I+ L+T
Sbjct: 41  YYSENGISGKRKQKKKVTFVESAPNLELQTHNAKTSPKSNQIDIVKLET 89


>SB_19730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
 Frame = +1

Query: 520 VMVRRDEKSRVFI---VKNEQNIEYLKANKYYAFHSDTLIILSLKTIA 654
           +++   +K++ +I    K  +N+EY+K  +YY+   DT + + +  IA
Sbjct: 164 LLIEAGDKAKRYIDRMKKTGENVEYMKVAQYYSSALDTAMNIGVPMIA 211


>SB_17067| Best HMM Match : TP2 (HMM E-Value=4.1)
          Length = 330

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/49 (26%), Positives = 28/49 (57%)
 Frame = +1

Query: 502 FHCKNGVMVRRDEKSRVFIVKNEQNIEYLKANKYYAFHSDTLIILSLKT 648
           ++ +NG+  +R +K +V  V++  N+E    N   +  S+ + I+ L+T
Sbjct: 271 YYSENGISGKRKQKKKVTFVESAPNLELQTHNAKTSPKSNQIDIVKLET 319


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,216,658
Number of Sequences: 59808
Number of extensions: 311225
Number of successful extensions: 899
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)