Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120381.Seq
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U68266-1|AAB16981.1|  219|Caenorhabditis elegans RAB-3 protein.        31   0.59 
U68265-1|AAB16980.1|  219|Caenorhabditis elegans RAB-3 protein.        31   0.59 
U28944-15|AAK68196.1|  219|Caenorhabditis elegans Rab family pro...    31   0.59 
U28944-14|AAK68195.1|  233|Caenorhabditis elegans Rab family pro...    31   0.59 
AB112928-1|BAD07033.1|  219|Caenorhabditis elegans Rab3 protein.       31   0.59 
Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AF106581-8|AAC78209.2|   94|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z54342-16|CAA91156.1|  755|Caenorhabditis elegans Hypothetical p...    28   7.3  
Z48006-1|CAA88047.1|  642|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z47072-4|CAA87370.1|  755|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z73971-3|CAA98253.1|  265|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AF016446-6|AAC24162.1|  322|Caenorhabditis elegans Serpentine re...    27   9.6  

>U68266-1|AAB16981.1|  219|Caenorhabditis elegans RAB-3 protein.
          Length = 219

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +1

Query: 31  IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 186
           +++MD+  QL +  L     +T   EN+  N+K++ EKL  + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192


>U68265-1|AAB16980.1|  219|Caenorhabditis elegans RAB-3 protein.
          Length = 219

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +1

Query: 31  IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 186
           +++MD+  QL +  L     +T   EN+  N+K++ EKL  + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192


>U28944-15|AAK68196.1|  219|Caenorhabditis elegans Rab family
           protein 3, isoform b protein.
          Length = 219

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +1

Query: 31  IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 186
           +++MD+  QL +  L     +T   EN+  N+K++ EKL  + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192


>U28944-14|AAK68195.1|  233|Caenorhabditis elegans Rab family
           protein 3, isoform a protein.
          Length = 233

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +1

Query: 31  IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 186
           +++MD+  QL +  L     +T   EN+  N+K++ EKL  + CD + +S++
Sbjct: 158 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 206


>AB112928-1|BAD07033.1|  219|Caenorhabditis elegans Rab3 protein.
          Length = 219

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 16/52 (30%), Positives = 31/52 (59%)
 Frame = +1

Query: 31  IINMDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVE 186
           +++MD+  QL +  L     +T   EN+  N+K++ EKL  + CD + +S++
Sbjct: 144 VVSMDRGRQLAD-QLGLEFFETSAKENI--NVKAVFEKLVEIICDKMAESLD 192


>Z81128-2|CAB03397.2|  232|Caenorhabditis elegans Hypothetical
           protein T23D8.2 protein.
          Length = 232

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 285 IESSFDKNHIVAKLCDATRAKEWQTMS 365
           +ES++DK H + + C  T + +W T +
Sbjct: 131 VESAWDKTHQLFECCGVTNSSDWLTFT 157


>AF106581-8|AAC78209.2|   94|Caenorhabditis elegans Hypothetical
           protein VC5.1 protein.
          Length = 94

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -1

Query: 687 T*IKLNFEAFFCYRFQTQNYQRIAMKSVIFVGFEIFNILLIFNNKHATFFVASH 526
           T +K    + F   FQT   Q I +KS +F  F ++ +L     +HA+     H
Sbjct: 35  TKLKFKIASSFSENFQTPAVQIILVKSKVFPSFWVYYLLNSNIAEHASIICVFH 88


>Z54342-16|CAA91156.1|  755|Caenorhabditis elegans Hypothetical
           protein F26C11.1 protein.
          Length = 755

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 514 NGVMVRRDEKSRVFIVKNEQNIEYLKANKYYAFHS-DTLIILSLKTI 651
           N +  R  EK R        +I+YLK  K+YA+ S D L+   L T+
Sbjct: 601 NEIFERGREKIRCVADAENCSIDYLKPLKFYAYSSHDQLVYALLVTL 647


>Z48006-1|CAA88047.1|  642|Caenorhabditis elegans Hypothetical
           protein F19C6.1 protein.
          Length = 642

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 584 YSIFCSFLT-INTRLFSSRLTITPFLQWKCICKTATERHEF 465
           Y + C +LT    + F+  +    FLQWK + K   ++H F
Sbjct: 163 YRLTCQYLTDAPFKEFAESMYFHRFLQWKWLEKRPVDKHTF 203


>Z47072-4|CAA87370.1|  755|Caenorhabditis elegans Hypothetical
           protein F26C11.1 protein.
          Length = 755

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 514 NGVMVRRDEKSRVFIVKNEQNIEYLKANKYYAFHS-DTLIILSLKTI 651
           N +  R  EK R        +I+YLK  K+YA+ S D L+   L T+
Sbjct: 601 NEIFERGREKIRCVADAENCSIDYLKPLKFYAYSSHDQLVYALLVTL 647


>Z73971-3|CAA98253.1|  265|Caenorhabditis elegans Hypothetical
           protein C50H2.5 protein.
          Length = 265

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 349 SLARVASHNLATMWFLSNEDSMTCLKFRLSKI 254
           +L    SH   T   +S E+++T L +RLSKI
Sbjct: 25  TLIETLSHEAITQQSVSAENALTLLHYRLSKI 56


>AF016446-6|AAC24162.1|  322|Caenorhabditis elegans Serpentine
           receptor, class h protein20 protein.
          Length = 322

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +2

Query: 479 LLPFYKYISIVKTVLW*DATKKVACLLLKMSKILNISKPTNIT 607
           ++PF  Y+S + + LW   T  +  L+   +  +  + PT+I+
Sbjct: 185 IVPFSDYVSSITSTLWLSQTSLLIILVPSTTLFVKFNLPTSIS 227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,097,921
Number of Sequences: 27780
Number of extensions: 244633
Number of successful extensions: 791
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)