Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120380.Seq
         (809 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    40   6e-04
SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein 4...    28   1.8  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    27   2.4  
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma...    27   3.2  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    25   9.6  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    25   9.6  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 24/80 (30%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
 Frame = +2

Query: 533 RCMSNLQSRMDTFVNF-WPAALRDMITNIAEAGLFYTG--------RGDETVCFFCDCCV 685
           R M N   R+DTF    WP A +     +A  G +Y          R D   C+ C    
Sbjct: 17  REMCNYSKRLDTFQKKKWPRA-KPTPETLATVGFYYNPISESNSEERLDNVTCYMCTKSF 75

Query: 686 RDWHINEDAWQRHATENPQC 745
            DW  ++D  + H T +P C
Sbjct: 76  YDWEDDDDPLKEHITHSPSC 95



 Score = 31.9 bits (69), Expect = 0.11
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 8/56 (14%)
 Frame = +3

Query: 303 SLIVNGFKYNQVD--------DHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYA 446
           +L   GF YN +         D+V C  C     +W +D+     H+T SP C +A
Sbjct: 43  TLATVGFYYNPISESNSEERLDNVTCYMCTKSFYDWEDDDDPLKEHITHSPSCPWA 98



 Score = 30.3 bits (65), Expect = 0.34
 Identities = 9/35 (25%), Positives = 15/35 (42%)
 Frame = +2

Query: 650 DETVCFFCDCCVRDWHINEDAWQRHATENPQCYLY 754
           D   C +CD  + DW  ++D +  H      C  +
Sbjct: 159 DAAHCLYCDINLHDWEPDDDPYTEHKRRRADCVFF 193



 Score = 25.4 bits (53), Expect = 9.6
 Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
 Frame = +3

Query: 306 LIVNGFKYN---QVDDHVVCEYCEAEIKNWSEDE 398
           +  +GF YN      D   C YC+  + +W  D+
Sbjct: 144 MAASGFVYNPTADAKDAAHCLYCDINLHDWEPDD 177


>SPBC1861.06c |mug131||S. pombe specific UPF0300 family protein
           4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 548 NWTCICTHTWVCLLY*YSVDGNVVAK 471
           +W C+ T  + C ++ +SV GN + K
Sbjct: 272 DWVCVSTQHFHCNIHVHSVSGNAIRK 297


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
           Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = -2

Query: 538 ASVHTLGSAFFTSTALMVMLSPNDSCSAILLAYAQYGDKVTCAYSIHSSSDQFFISASQY 359
           AS  + G +F + T L+V  S  +  + ++    Q    + C Y +H+SS  + I  + Y
Sbjct: 703 ASNSSFGRSFPSCTVLVVN-SELELINEVIGLNRQLDPTIVCGYEVHNSSWGYLIERASY 761


>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1000

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 4/123 (3%)
 Frame = +1

Query: 217 NIAEHVFDMLLESMARL---KIIPL*TRRLSTA*SLTGL-NTIKSTITLCASIVKQK*KI 384
           N  +H+  + +ES+  +   +++ L T       ++ GL  T+  T TLC+S        
Sbjct: 496 NPEKHITKVTVESLYLMMGQELVYLETVPAGNVFAIGGLAGTVLRTATLCSS------PN 549

Query: 385 GPKTSVLNMHT*PCRRIARMPTRLLSTNRLATTLPSTLY**RRQTQVCVQMHVQFTVAYG 564
           GP    +     P  R+A  P R    N+L T L         Q   CVQ+ V+    + 
Sbjct: 550 GPNLVGVTQQMEPIVRVALEPVRPFEMNKLVTGLDML-----NQADPCVQIAVEENGEHV 604

Query: 565 YVC 573
            +C
Sbjct: 605 IMC 607


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = -2

Query: 655  FVSATRVKKSRFRNVRNHVTQCGRPKINKRIHTRL*IGH--ASVHTLGSAFFTSTALMVM 482
            F + TR++ +RF   R   T C  P++    H  L        +H+LG+  F++ + + +
Sbjct: 1065 FPNGTRLEHARFNCARYLWTLCIAPRLKMSPHDALYCAKFVKLLHSLGTPNFSTMSFLEI 1124

Query: 481  L 479
            L
Sbjct: 1125 L 1125


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 18/72 (25%), Positives = 32/72 (44%)
 Frame = +3

Query: 327 YNQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIAEHESFGDNITINAVLV 506
           ++ + D +  E  E  ++ + E E I+Y     S + AY N I+      + + I+  L 
Sbjct: 504 FSHISDSLTTEELELILRQYGEIESIKYLKNRSSGFVAYTN-ISNAMKAVNGLPIHP-LF 561

Query: 507 KKADPSVCTDAC 542
           KK+      D C
Sbjct: 562 KKSKIRYAPDRC 573


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,328,992
Number of Sequences: 5004
Number of extensions: 69124
Number of successful extensions: 204
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)