Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120380.Seq
         (809 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0969 - 29787617-29787919,29788019-29788180,29788962-297890...    31   1.1  
04_03_0632 + 18200844-18200970,18201134-18201190,18201370-182014...    31   1.4  
07_03_0521 + 19016824-19017000,19017064-19017099,19017860-190186...    29   4.4  
05_04_0402 - 20991628-20991755,20992461-20992578,20992670-209927...    29   4.4  
02_05_1280 - 35434165-35434392,35434639-35434800,35435241-354353...    29   5.8  
11_01_0607 - 4837257-4837447,4837526-4837631,4837913-4838005,483...    28   7.6  
03_01_0321 + 2512830-2513114,2513390-2513428,2513647-2513674,251...    28   7.6  
01_06_1512 + 37881055-37881229,37881388-37881444,37881537-378816...    28   7.6  

>04_04_0969 -
           29787617-29787919,29788019-29788180,29788962-29789093,
           29789708-29789760,29790518-29791007
          Length = 379

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 12/44 (27%), Positives = 27/44 (61%)
 Frame = -2

Query: 523 LGSAFFTSTALMVMLSPNDSCSAILLAYAQYGDKVTCAYSIHSS 392
           LGS+  + T  ++ + PN+  ++ ++A++Q G + TC  S + +
Sbjct: 163 LGSSGTSFTPHIITVKPNEDVASKIMAFSQQGPRTTCIISANGA 206


>04_03_0632 +
           18200844-18200970,18201134-18201190,18201370-18201460,
           18201545-18201705,18202176-18202303,18202386-18202523,
           18202966-18203058,18203546-18203704
          Length = 317

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -1

Query: 407 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 321
           FNT V  P++Y  FTIL   +I ++I++K
Sbjct: 239 FNTAVVSPVYYVMFTIL--TIIANMIMYK 265


>07_03_0521 +
           19016824-19017000,19017064-19017099,19017860-19018624,
           19018772-19018864,19018944-19019114,19019206-19019397,
           19019443-19019530,19019617-19019685,19019841-19020054,
           19020136-19020334,19020406-19020504,19020594-19020850,
           19020927-19021002,19021091-19021204
          Length = 849

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = -3

Query: 786 RFDKTLYLHRQYK*HCGFSVACRCQASSLICQSRTQQSQKKHTVS 652
           R+ ++  L+RQ K +  F + CRCQ   ++  ++    +KK  ++
Sbjct: 92  RYRQSRVLNRQKKDNTTFGINCRCQPKCIVNITKDFDDRKKELIA 136


>05_04_0402 -
           20991628-20991755,20992461-20992578,20992670-20992762,
           20992841-20992978,20993070-20993197,20993270-20993430,
           20993548-20993638,20993731-20993787,20993986-20994139
          Length = 355

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = -1

Query: 407 FNTLVFGPIFYFCFTILAHNVIVDLIVFKPVNDQAV 300
           FNT V  PI+Y  FT L   ++   I+FK  + Q++
Sbjct: 248 FNTAVVSPIYYAMFTSL--TILASAIMFKDWSGQSI 281


>02_05_1280 -
           35434165-35434392,35434639-35434800,35435241-35435372,
           35436048-35436115,35436719-35437313
          Length = 394

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 14/62 (22%), Positives = 34/62 (54%)
 Frame = -2

Query: 589 GRPKINKRIHTRL*IGHASVHTLGSAFFTSTALMVMLSPNDSCSAILLAYAQYGDKVTCA 410
           GRP  + ++     +G   + ++G+ F   T  ++++SP +  +A +++++Q G +  C 
Sbjct: 184 GRPPGSGKMQQLASLGKWFLGSVGTGF---TPHVIIISPGEDVAARIMSFSQQGPRAVCI 240

Query: 409 YS 404
            S
Sbjct: 241 IS 242


>11_01_0607 -
           4837257-4837447,4837526-4837631,4837913-4838005,
           4838405-4838542,4838651-4838778,4838889-4839049,
           4839145-4839235,4841437-4841602
          Length = 357

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 407 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 321
           FNT V  PI+Y  FT L   ++  +I+FK
Sbjct: 233 FNTAVVSPIYYVMFTSL--TILASVIMFK 259


>03_01_0321 +
           2512830-2513114,2513390-2513428,2513647-2513674,
           2513893-2513975,2514104-2514144,2514539-2514624,
           2514941-2514963
          Length = 194

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 305 AVDKRRVYNGIIFKRAMLSSNMSNTCSAMLSRKLSRVL 192
           A DK++VY   I    ML    S  C  +L  KLS++L
Sbjct: 110 ASDKQKVYEYPIKTLTMLDRTFSGCCMQLLLSKLSKML 147


>01_06_1512 +
           37881055-37881229,37881388-37881444,37881537-37881627,
           37881759-37881919,37882002-37882129,37882215-37882352,
           37882665-37882757,37882858-37882975,37883064-37883194
          Length = 363

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 407 FNTLVFGPIFYFCFTILAHNVIVDLIVFKPVNDQAVDK 294
           FN  V  PI+Y  FT L   ++   I+FK  + Q+  K
Sbjct: 255 FNAAVVSPIYYAMFTTL--TILASAIMFKDWSGQSASK 290


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,101,759
Number of Sequences: 37544
Number of extensions: 430600
Number of successful extensions: 1182
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)