Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120380.Seq
         (809 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39662| Best HMM Match : BIR (HMM E-Value=1.2e-19)                   51   1e-06
SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)                   46   5e-05
SB_28819| Best HMM Match : BIR (HMM E-Value=2.6e-32)                   36   0.051
SB_8042| Best HMM Match : DUF803 (HMM E-Value=0)                       29   4.5  
SB_38346| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-20)                 29   5.9  
SB_1636| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.9  
SB_41991| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)                28   7.8  

>SB_39662| Best HMM Match : BIR (HMM E-Value=1.2e-19)
          Length = 314

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 23/66 (34%), Positives = 34/66 (51%)
 Frame = +2

Query: 554 SRMDTFVNFWPAALRDMITNIAEAGLFYTGRGDETVCFFCDCCVRDWHINEDAWQRHATE 733
           +R+ TF NFWPA     +  +A AG  +TGR D   CF C   ++ W +++   + H   
Sbjct: 137 ARVRTF-NFWPATSSANVFELARAGFVFTGRDDVVECFKCKGTLKQWKVDDRPIESHREF 195

Query: 734 NPQCYL 751
            P C L
Sbjct: 196 YPDCPL 201



 Score = 33.9 bits (74), Expect = 0.16
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 261 SFENYPIVNTAFINSLIVNGFKYNQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYC 437
           +F  +P  ++A +  L   GF +   DD V C  C+  +K W  D+    +H    P C
Sbjct: 141 TFNFWPATSSANVFELARAGFVFTGRDDVVECFKCKGTLKQWKVDDRPIESHREFYPDC 199


>SB_16819| Best HMM Match : BIR (HMM E-Value=7.5e-30)
          Length = 514

 Score = 45.6 bits (103), Expect = 5e-05
 Identities = 20/65 (30%), Positives = 32/65 (49%)
 Frame = +2

Query: 557 RMDTFVNFWPAALRDMITNIAEAGLFYTGRGDETVCFFCDCCVRDWHINEDAWQRHATEN 736
           R+ TFV+ WP +       ++ AG +Y G  D   C+ C   +R+W  ++  W  H   +
Sbjct: 134 RLTTFVD-WPESSPVRPWELSSAGFYYLGDQDSVKCYKCGVALRNWEPDDLPWVEHEKWS 192

Query: 737 PQCYL 751
           P C L
Sbjct: 193 PHCPL 197



 Score = 32.7 bits (71), Expect = 0.36
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +3

Query: 318 GFKYNQVDDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYC 437
           GF Y    D V C  C   ++NW  D+     H   SP+C
Sbjct: 156 GFYYLGDQDSVKCYKCGVALRNWEPDDLPWVEHEKWSPHC 195


>SB_28819| Best HMM Match : BIR (HMM E-Value=2.6e-32)
          Length = 141

 Score = 35.5 bits (78), Expect = 0.051
 Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
 Frame = +2

Query: 539 MSNLQSRMDTFVNFWPAALRDM---ITNIAEAGLFYTGRGDE---TVCFFCDCCVRDWHI 700
           M+  + R++TF + WP    D       +A AG ++    D+     CF C   +  W  
Sbjct: 10  MNMEKKRLETFKD-WPFNHMDCKCTAEKMAAAGFYHCETDDDPDVARCFVCFKELDGWEP 68

Query: 701 NEDAWQRHATENPQC 745
            +D WQ H   +P+C
Sbjct: 69  EDDPWQEHKKHSPKC 83


>SB_8042| Best HMM Match : DUF803 (HMM E-Value=0)
          Length = 603

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 410 IFNTLVFGPIFYFCFTILAHNVIVDLIVFK 321
           IFNT +  PI+Y  FT+L   +I   I+FK
Sbjct: 485 IFNTSLVTPIYYVMFTLL--TIIASAILFK 512


>SB_38346| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-20)
          Length = 340

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 544 GHASVHTLGSAFFTSTALMVMLSPNDSCSAILLAYAQYGDKVT 416
           G A VH LG+   T++A+ V+    D C AI    + Y  +VT
Sbjct: 107 GGAVVHVLGNMLLTTSAMHVLFLSLDRCVAITWPLS-YNTRVT 148


>SB_1636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -1

Query: 488 GNVVAKRFVLSNLVGIRAIRRQGYVCIF-NTLVFGPIFYFCFTI 360
           G++V  ++V+   + +RA+R QG++ I  +TL   P +Y  + I
Sbjct: 65  GHLVIGQYVIKGTLLLRAVRYQGHLVITGSTLSIAPCYYGQYVI 108


>SB_41991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 779

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 674 DCCVRDWHINEDAWQRHATENPQCYL 751
           DC VR W      WQ H  +NP+C L
Sbjct: 407 DCTVRAW-----TWQGHFIDNPRCIL 427


>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
          Length = 2059

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 72  TKTKLGHINVSLNQNDPNVLILTVTL 149
           TKT L  +     +NDPNVL +TV L
Sbjct: 760 TKTALSTVQCCSLENDPNVLAITVIL 785


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,433,265
Number of Sequences: 59808
Number of extensions: 539412
Number of successful extensions: 1593
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1592
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)