Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120380.Seq
         (809 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              25   0.63 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.3  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   5.8  
AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.      22   5.8  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.4 bits (53), Expect = 0.63
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +1

Query: 526 CVQMHVQFTVAYGYV 570
           CV ++VQF+V YG+V
Sbjct: 696 CVPINVQFSVLYGFV 710


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 17/75 (22%), Positives = 29/75 (38%)
 Frame = -2

Query: 511 FFTSTALMVMLSPNDSCSAILLAYAQYGDKVTCAYSIHSSSDQFFISASQYXXXXXXXX* 332
           F+T   ++  +  +  C  +    A+ G+KVT   SI  S   F +  S+          
Sbjct: 235 FYTVNLILPTVLISFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILPPTSLVLP 294

Query: 331 LYLNPLTIKLLINAV 287
           L    L    ++N V
Sbjct: 295 LIAKYLLFTFIMNTV 309


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = -3

Query: 288 CLQWDNFQTS 259
           CL+W+N+Q+S
Sbjct: 8   CLRWNNYQSS 17


>AB095513-1|BAC76335.1|   39|Apis mellifera brood-complex protein.
          Length = 39

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 6/10 (60%), Positives = 10/10 (100%)
 Frame = -3

Query: 288 CLQWDNFQTS 259
           CL+W+N+Q+S
Sbjct: 8   CLRWNNYQSS 17


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,350
Number of Sequences: 438
Number of extensions: 4678
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)