Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120380.Seq
         (809 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g02350.1 68418.m00158 DC1 domain-containing protein contains ...    33   0.30 
At4g23882.1 68417.m03434 heavy-metal-associated domain-containin...    30   1.6  
At4g38730.1 68417.m05486 expressed protein                             30   2.1  
At4g09640.1 68417.m01584 expressed protein several hypothetical ...    29   4.8  
At3g23870.1 68416.m03000 permease-related low similarity to puri...    28   6.4  
At1g34470.1 68414.m04283 permease-related low similarity to puri...    28   6.4  
At1g12570.1 68414.m01459 glucose-methanol-choline (GMC) oxidored...    28   6.4  
At5g02330.1 68418.m00156 DC1 domain-containing protein contains ...    28   8.4  
At4g29380.1 68417.m04197 protein kinase family protein / WD-40 r...    28   8.4  
At2g04235.1 68415.m00411 expressed protein weak similarity to ne...    28   8.4  
At1g71900.1 68414.m08312 expressed protein                             28   8.4  

>At5g02350.1 68418.m00158 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 651

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 16/68 (23%), Positives = 31/68 (45%)
 Frame = +3

Query: 339 DDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIAEHESFGDNITINAVLVKKAD 518
           D++++C+ C   I   +   C++     L   CA A++  +H   G  +T+    V+  D
Sbjct: 388 DENIICQACILPIYEGNYYSCMDQCDFVLHEACANASRKKDHALHGHPLTLK---VQGED 444

Query: 519 PSVCTDAC 542
              C+  C
Sbjct: 445 SFFCSACC 452


>At4g23882.1 68417.m03434 heavy-metal-associated domain-containing
           protein
          Length = 284

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = -1

Query: 698 YANHVRNNRKRNIQFRLRDPCKKVPLPQCS*SCHAMRQAKN*QTYPYATVNW 543
           Y++HV    ++N Q +  +  KK P   C   C   +++KN +  P A  NW
Sbjct: 150 YSSHVPRTPEQN-QNKTMEKKKKKPTKCCLLMCFGNKRSKNTKIEPMAIPNW 200


>At4g38730.1 68417.m05486 expressed protein
          Length = 326

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 407 FNTLVFGPIFYFCFTILAHNVIVDLIVFKPVNDQAVD 297
           FN  +  PI+Y  FT L   ++   I+FK  N Q  D
Sbjct: 237 FNAAIVSPIYYVMFTTL--TIVASAIMFKDWNGQNTD 271


>At4g09640.1 68417.m01584 expressed protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 386

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 407 FNTLVFGPIFYFCFTILAHNVIVDLIVFKPVNDQA 303
           FNT V  PI+Y  FT L   ++  +I+FK  + Q+
Sbjct: 251 FNTAVVSPIYYVMFTSL--TILASVIMFKDWDRQS 283


>At3g23870.1 68416.m03000 permease-related low similarity to purine
           permease [Arabidopsis thaliana] GI:7620007; contains 9
           predicted transmembrane domains; contains Pfam PF05653:
           Protein of unknown function (DUF803); identified as
           COG0697, Permeases of the drug/metabolite transporter
           (DMT) superfamily
          Length = 335

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 407 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 321
           FNT V  P++Y  FT     +I  +I+FK
Sbjct: 240 FNTAVISPVYYVMFT--TFTIIASMIMFK 266


>At1g34470.1 68414.m04283 permease-related low similarity to purine
           permease [Arabidopsis thaliana] GI:7620007
          Length = 368

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -1

Query: 407 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 321
           FNT V  PI+Y  FT L   ++  +I+FK
Sbjct: 251 FNTAVVSPIYYVMFTSL--TILASVIMFK 277


>At1g12570.1 68414.m01459 glucose-methanol-choline (GMC)
           oxidoreductase family protein similar to mandelonitrile
           lyase from Prunus serotina [SP|P52706, SP|P52707];
           contains Pfam profile PF00732 GMC oxidoreductase
          Length = 572

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
 Frame = +3

Query: 609 RTLRKRDFFTRVAETKLY--VSFAIVA--YVIGILTKTPGSDTPPKTRNVICIVGEGKEF 776
           R +R      RV ++K +    +A V+  Y++ +   TP +  PP++     +    +EF
Sbjct: 441 RCVRGIQTIERVVQSKAFSRYKYADVSFEYLLNLTASTPVNLRPPRSGPGASLPPSAEEF 500

Query: 777 CQNAIT 794
           CQ+ +T
Sbjct: 501 CQHTVT 506


>At5g02330.1 68418.m00156 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 656

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/54 (20%), Positives = 26/54 (48%)
 Frame = +3

Query: 339 DDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIAEHESFGDNITINAV 500
           +++++C+ C   I   +   C++  +  L   CA A++  +H      +T+  V
Sbjct: 388 NENIICQACILPIYEGNYYSCMDQCNFILHEACANASRKKDHALHSHPLTLKVV 441


>At4g29380.1 68417.m04197 protein kinase family protein / WD-40 repeat
            family protein contains Pfam PF00400: WD domain, G-beta
            repeat; contains Pfam PF00069: Protein kinase domain;
            contains PF02985: HEAT repeat; similar to adaptor protein
            (GI:1817584) [Homo sapiens]; similar to VPS15 protein
            (GI:6103009) [Pichia pastoris]
          Length = 1494

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/61 (19%), Positives = 28/61 (45%)
 Frame = -1

Query: 806  NVSGSNCVLTKLFTFTDNTNNIAGFRWRVAARRLR*YANHVRNNRKRNIQFRLRDPCKKV 627
            N  G +C         +N  +++ F+W++ + ++    NH +N   +     L +P  ++
Sbjct: 1314 NAEGGSCHQVLRVANYENETDVSEFQWKLPSNKVNPKPNHRQNMSSKYRIEELNEPPPRL 1373

Query: 626  P 624
            P
Sbjct: 1374 P 1374


>At2g04235.1 68415.m00411 expressed protein weak similarity to
            neurofilament protein (GI:161292) [Loligo pealei]; weak
            similarity to Glucoamylase S1/S2 precursor (EC 3.2.1.3)
            (Glucan 1,4-alpha- glucosidase) (1,4-alpha-D-glucan
            glucohydrolase) (Swiss-Prot:P08640) [Saccharomyces
            cerevisiae]
          Length = 1226

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = +2

Query: 485  YHQRCTSKEGRPKCVYRCMSNLQSRMDTFVNFWP 586
            ++QR T K G P CV   +SN  S  DTFV  +P
Sbjct: 1038 FNQRLTLKPGHPSCV--LVSN--SLSDTFVKHFP 1067


>At1g71900.1 68414.m08312 expressed protein
          Length = 343

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 407 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 321
           FNT +  PI+Y  FT L   ++  +I+FK
Sbjct: 251 FNTAIVSPIYYVMFTSL--TILASVIMFK 277


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,142,239
Number of Sequences: 28952
Number of extensions: 353239
Number of successful extensions: 936
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1843581600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)