Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120379.Seq
(781 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0353 - 33317015-33318235,33318567-33318824,33319587-333199... 31 1.0
05_01_0054 + 379974-380215,380343-380556,381603-381892,382384-38... 29 4.1
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120... 29 4.1
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 29 4.1
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 29 4.1
01_01_0755 - 5827893-5829764 29 4.1
01_01_0754 - 5823076-5823089,5823797-5823911,5823992-5824045,582... 29 5.5
11_01_0524 - 4115125-4115491,4116096-4116180,4116796-4116938,411... 28 7.2
02_01_0045 + 307058-307552,308670-308716,308779-308866,309664-30... 28 7.2
>03_06_0353 - 33317015-33318235,33318567-33318824,33319587-33319904,
33319949-33320011,33320103-33320496,33320684-33320796,
33320932-33321639,33321667-33323199,33323395-33323607,
33323718-33324700,33324890-33325423,33325694-33325820,
33326083-33326162,33327347-33327377,33327949-33328053,
33328119-33328124,33328349-33328985,33329144-33329478,
33330394-33331113
Length = 2792
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -1
Query: 490 TDLDTIPQYMSLPGENLNNATIEAQSELINIDAPDLINSDLLTLKDPT 347
TD+D + + SLPG++ + ++NI L ++ +T K PT
Sbjct: 1075 TDVDIMKRSKSLPGKDNQIVAVSKNQNVLNIVTAKLDTAEFITNKSPT 1122
>05_01_0054 + 379974-380215,380343-380556,381603-381892,382384-382560,
382705-383481,383572-383645,383757-383819,383919-384007,
384106-384201,384319-384978,385613-385687,386422-386492,
386578-386635,386900-387104,387379-387869
Length = 1193
Score = 29.1 bits (62), Expect = 4.1
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Frame = -3
Query: 269 NRNGRLFNADISNDVTSSLAFVPSSKSSQRPDCSDNTSDDTSPCSTDYHEASALD-LVQS 93
+ N + + +SN TSS +F+ S SSQ +DN SD+ + Y E D L+
Sbjct: 796 SNNSSVVHQSLSNGFTSSSSFI--SSSSQSSVHNDNLSDEV---NFVYPENGPFDNLIPQ 850
Query: 92 LDEISSCDSSNFSQS 48
+ NFS S
Sbjct: 851 TSSLRQKPGKNFSSS 865
>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
34512493-34513964,34514114-34514377,34514761-34514978,
34515759-34516030,34516190-34516559,34516578-34516797,
34516819-34518931,34518941-34519193,34519269-34519401,
34520597-34521114,34521207-34522115,34522195-34522368,
34522833-34522882,34523963-34524035,34524413-34524477,
34524736-34525522,34525622-34525878,34525989-34526109,
34526315-34526956
Length = 5320
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -3
Query: 284 KSRIVNRNGRLFNADISNDVTSSLAFVPSSKSSQRPDCS 168
+SR+ N+ + N+ ISN + SS + V +++QR S
Sbjct: 3380 ESRVSNQQSEIMNSSISNSMPSSSSSVSYHRNTQRQGAS 3418
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 29.1 bits (62), Expect = 4.1
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = -3
Query: 200 SSKSSQRPDCSDNTSDDTSPCSTDYHEASALDLVQSLDEISSCDSSNFSQSRDISPVNNQ 21
S+ S Q P S+NT D T S E S+L + S SS S+FS + P+ +
Sbjct: 59 SNVSIQNPVASNNTLDKT--FSKSMTENSSLSMESSRASSSSSSCSSFSSTDINRPIQQE 116
Query: 20 L 18
L
Sbjct: 117 L 117
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = -1
Query: 376 SDLLTLKDPTHPISSNIVSSDKQVSNIDF--CENRESSTETEDY 251
++L T + T ++ +++ SD ++S+I+ CE + S TEDY
Sbjct: 2521 AELGTAEGSTLEVTDSVLVSDVELSSIETVQCEESDGSKSTEDY 2564
>01_01_0755 - 5827893-5829764
Length = 623
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +3
Query: 387 SGASMLISSDCASIVALFKFSPGKL-IYCG-IVSKSVSGIYSIHLVLRLVFH 536
+G +S D AL PG++ +Y G +V + +G+Y +L L L FH
Sbjct: 162 TGIVWSVSRDVTRYAALLA-EPGEIAVYLGNLVDSTYTGVYHANLTLHLYFH 212
>01_01_0754 -
5823076-5823089,5823797-5823911,5823992-5824045,
5825629-5827251
Length = 601
Score = 28.7 bits (61), Expect = 5.5
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Frame = +3
Query: 387 SGASMLISSDCASIVALFKFSPGKL-IYCG-IVSKSVSGIYSIHLVLRLVFH 536
+G +S D + AL +PG++ +Y G ++ + +G+Y +L L L FH
Sbjct: 148 TGIVWSVSRDVSRYTALLA-APGEVAVYLGNLIDDTYTGVYHANLTLHLYFH 198
>11_01_0524 -
4115125-4115491,4116096-4116180,4116796-4116938,
4117449-4117654,4118650-4118748,4118958-4118993,
4119222-4119276,4119505-4119690,4120572-4120759
Length = 454
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -1
Query: 328 IVSSDKQVSNIDFCENRESSTETEDY 251
IV S K + N DF EN+ +E +DY
Sbjct: 172 IVPSSKMLVNFDFDENKHVISEAQDY 197
>02_01_0045 +
307058-307552,308670-308716,308779-308866,309664-309756,
309788-309950,310554-310627,310889-310927
Length = 332
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/55 (27%), Positives = 29/55 (52%)
Frame = -1
Query: 496 PLTDLDTIPQYMSLPGENLNNATIEAQSELINIDAPDLINSDLLTLKDPTHPISS 332
P D + + ++L +N I ++S+L+ + PDL++ DLL P + +S
Sbjct: 272 PGPDAQSALRALALARSGMNIGRIGSRSQLLLVCCPDLVSCDLLNDDGPGYEQAS 326
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,294,584
Number of Sequences: 37544
Number of extensions: 322702
Number of successful extensions: 922
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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