Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120379.Seq
         (781 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical ...    31   1.2  
Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical p...    30   1.6  
AY389809-1|AAR28681.1|  909|Caenorhabditis elegans zinc finger t...    30   1.6  
AF047663-6|AAC04447.1|  368|Caenorhabditis elegans Hypothetical ...    30   1.6  
Z77662-16|CAJ90504.1|  424|Caenorhabditis elegans Hypothetical p...    30   2.1  
U38378-4|AAA79749.1|  502|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AL033512-5|CAA22073.2|  424|Caenorhabditis elegans Hypothetical ...    30   2.1  
AF040643-1|AAB94960.1|  998|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z77136-3|CAB00886.1|  252|Caenorhabditis elegans Hypothetical pr...    29   3.7  
U28991-14|AAA68388.1|  352|Caenorhabditis elegans Hypothetical p...    29   3.7  
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr...    29   4.9  
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr...    29   4.9  
U40945-1|AAA81719.2|  656|Caenorhabditis elegans Hypothetical pr...    29   4.9  
Z92817-3|CAJ43914.1|  511|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z92817-2|CAJ43913.1|  510|Caenorhabditis elegans Hypothetical pr...    28   6.5  
Z99942-2|CAB17072.1|  468|Caenorhabditis elegans Hypothetical pr...    28   8.6  
Z83220-4|CAC42264.1|  617|Caenorhabditis elegans Hypothetical pr...    28   8.6  

>AL110485-3|CAB60351.1| 2145|Caenorhabditis elegans Hypothetical
            protein Y46G5A.4 protein.
          Length = 2145

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -1

Query: 472  PQYMSLPGENLNNATIEAQSELINIDAPDLINSDLLTLKDPTHPISSNI 326
            P Y +L G    + + +A SEL+ +   DL NS  + +KD    +S N+
Sbjct: 1767 PNYYNLQGTTHRHLS-DALSELVELTLKDLENSKCIAVKDEMDTVSLNL 1814


>Z68108-14|CAA92133.3| 2066|Caenorhabditis elegans Hypothetical
           protein T05A10.1a protein.
          Length = 2066

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -3

Query: 227 VTSSLAFVPSSKSSQRPDCSDNTSDDTSPCSTDYHEASALDLVQSLDEIS 78
           V+ +L ++ S +  QR D + N S  TSP   D     A    QSL E+S
Sbjct: 398 VSQALQYIQSMQLQQRADGTPNGSTRTSPGPKDSRMLQAASRSQSLFELS 447


>AY389809-1|AAR28681.1|  909|Caenorhabditis elegans zinc finger
           transcription factorSMA-9 protein.
          Length = 909

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -3

Query: 227 VTSSLAFVPSSKSSQRPDCSDNTSDDTSPCSTDYHEASALDLVQSLDEIS 78
           V+ +L ++ S +  QR D + N S  TSP   D     A    QSL E+S
Sbjct: 398 VSQALQYIQSMQLQQRADGTPNGSTRTSPGPKDSRMLQAASRSQSLFELS 447


>AF047663-6|AAC04447.1|  368|Caenorhabditis elegans Hypothetical
           protein W09G12.7 protein.
          Length = 368

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
 Frame = -3

Query: 242 DISNDVTSSLAFVPSSKSSQRPDCSDNTSDDTSPCS--TDYHEASALDLVQSLDEISSCD 69
           D S++  SS +     KS ++   S   S D+S  S  +D  +       +   + SS D
Sbjct: 81  DSSDNSDSSESSDDDKKSKKKKKKSKKDSSDSSDSSDSSDSSDDGKKKKKKKSKKDSSDD 140

Query: 68  SSNFSQSRDISPVNNQLKKKKK 3
           SS+ S S D S  ++  KKKKK
Sbjct: 141 SSDSSDSSDSSDSSDDDKKKKK 162



 Score = 29.5 bits (63), Expect = 2.8
 Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
 Frame = -3

Query: 200 SSKSSQRPDCSDNTSDDT-SPCSTDYHEASALDLVQSLDEISSCDSSNFSQSRDISPVNN 24
           S K  ++ + SD++SD++ S  S+D  + S     +S  +  S DSS+ S S D S    
Sbjct: 69  SKKPKKKQESSDDSSDNSDSSESSDDDKKSKKKKKKSKKD--SSDSSDSSDSSDSSDDGK 126

Query: 23  QLKKKK 6
           + KKKK
Sbjct: 127 KKKKKK 132



 Score = 28.3 bits (60), Expect = 6.5
 Identities = 22/65 (33%), Positives = 32/65 (49%)
 Frame = -3

Query: 197 SKSSQRPDCSDNTSDDTSPCSTDYHEASALDLVQSLDEISSCDSSNFSQSRDISPVNNQL 18
           SK     D SD++    S  S+D  +       +S ++ SS DSS+   S D S  + + 
Sbjct: 133 SKKDSSDDSSDSSDSSDSSDSSDDDKKKKKKSKKSKNKGSSSDSSD---SSDDSSDDEKP 189

Query: 17  KKKKK 3
           KKKKK
Sbjct: 190 KKKKK 194


>Z77662-16|CAJ90504.1|  424|Caenorhabditis elegans Hypothetical
           protein Y49A3A.1 protein.
          Length = 424

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
 Frame = +3

Query: 282 FSQKSILLTCLSLDTMFDEIG*VGSFNVKRSLLIKSGASMLISSDCASIVALFKFSPGKL 461
           ++ K +LL C+ L T++  +G +       S++   G      S  A    LF   P   
Sbjct: 253 YALKHLLLACVGLGTIYQALGYL-------SVIFTDGVGKN-GSTVAGTSVLFPACPLLA 304

Query: 462 I---YCGIVSKSVSGIYSIHLVL 521
           +   YC I SKS SG+Y   +V+
Sbjct: 305 VIVPYCMIYSKSASGVYDDLIVI 327


>U38378-4|AAA79749.1|  502|Caenorhabditis elegans Hypothetical
           protein R11F4.1 protein.
          Length = 502

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 21/88 (23%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
 Frame = -1

Query: 511 WIEYMPLTDLDTIPQYMSLPGENLNNATIEAQSELINIDAPDLINSDLLTLKDPTHPISS 332
           W+E  P+   DT+   +S   E L N  I A  E+ ++   +   + ++  K+   P+ +
Sbjct: 43  WVEMDPMELYDTVVSCISKTIEKLENLGISA-DEIKSVGVANQRETSIVWDKETGKPLYN 101

Query: 331 NIVSSDKQVSNI-DFCENRESSTETEDY 251
            IV  D + S++ D   +R +S   +++
Sbjct: 102 AIVWLDTRTSSLADEAISRTASKSKDEF 129


>AL033512-5|CAA22073.2|  424|Caenorhabditis elegans Hypothetical
           protein Y49A3A.1 protein.
          Length = 424

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
 Frame = +3

Query: 282 FSQKSILLTCLSLDTMFDEIG*VGSFNVKRSLLIKSGASMLISSDCASIVALFKFSPGKL 461
           ++ K +LL C+ L T++  +G +       S++   G      S  A    LF   P   
Sbjct: 253 YALKHLLLACVGLGTIYQALGYL-------SVIFTDGVGKN-GSTVAGTSVLFPACPLLA 304

Query: 462 I---YCGIVSKSVSGIYSIHLVL 521
           +   YC I SKS SG+Y   +V+
Sbjct: 305 VIVPYCMIYSKSASGVYDDLIVI 327


>AF040643-1|AAB94960.1|  998|Caenorhabditis elegans Hypothetical
           protein F14D2.6 protein.
          Length = 998

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -1

Query: 370 LLTLKDPTHPISSNIVSSDKQVSNIDFCENRESSTETEDYSTPIYQ 233
           +L LK+        +V S  ++ N+DF EN E     E+ ++PI Q
Sbjct: 831 VLNLKNTKVIYGLLVVKSTAKLENLDFLENLEQIVSLENSTSPIIQ 876


>Z77136-3|CAB00886.1|  252|Caenorhabditis elegans Hypothetical
           protein ZC376.4 protein.
          Length = 252

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -3

Query: 194 KSSQRPDCSDNTSDDTSPCSTDY--HEASALDLVQSLDEISSCDSSNFSQSRDISPVNNQ 21
           K     D S+ +      C  DY  HE  + D  Q  D+I   D+S F  ++ +S + ++
Sbjct: 74  KGDDNEDSSEISKRGRVTCGLDYKNHEEESTDDFQ--DDIEELDNSQFEMAK-VSSIRDE 130

Query: 20  LKKKK 6
           LK  K
Sbjct: 131 LKDVK 135


>U28991-14|AAA68388.1|  352|Caenorhabditis elegans Hypothetical
           protein F08F8.1 protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
 Frame = -1

Query: 535 WNTKRRTRWIEYMPLTDLDTIPQYMSLPG-ENLNNATIEAQSELIN---IDAP--DLINS 374
           WNT  R   ++   ++   ++P+Y  LP  +N+        SE+I    I  P  DL   
Sbjct: 232 WNTNNRNS-VKNSFISP-PSMPEYEQLPNFQNVQPFNASETSEIIRFLRIQFPINDLTCG 289

Query: 373 DLLTLKDPTHPISSNIVSSDKQVSNIDFC 287
            L  L D   PIS N V++ +    I+FC
Sbjct: 290 LLENLSDYRKPISMNQVTTLRFCQTIEFC 318


>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical protein
            C46C2.1b protein.
          Length = 1677

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 454  PGENLNNATIEAQSELINIDAPDLINSDLLTLKDPTHPISSNI 326
            P +N  +AT    S ++ + A  + N+++  L  P HP+SS I
Sbjct: 1633 PPQNHTSATAPCPSAMVQLQA--VSNNNVNPLHQPPHPVSSQI 1673


>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical protein
            C46C2.1a protein.
          Length = 1838

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -1

Query: 454  PGENLNNATIEAQSELINIDAPDLINSDLLTLKDPTHPISSNI 326
            P +N  +AT    S ++ + A  + N+++  L  P HP+SS I
Sbjct: 1794 PPQNHTSATAPCPSAMVQLQA--VSNNNVNPLHQPPHPVSSQI 1834


>U40945-1|AAA81719.2|  656|Caenorhabditis elegans Hypothetical
           protein F10D7.1 protein.
          Length = 656

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = -3

Query: 209 FVPSSKSSQRPDCSDNT---SDDTSPCSTDYHEASALDLVQSLDEISSCDSSNFSQSRDI 39
           F+  S+++   D  +N+   S+D    STD   +      +S D +++ DSS+F++   +
Sbjct: 469 FMKKSQNTSNSDSINNSTLSSEDADDSSTDLISSVVSVPPESSDAVTTPDSSDFNEPEAV 528

Query: 38  SP 33
           +P
Sbjct: 529 TP 530


>Z92817-3|CAJ43914.1|  511|Caenorhabditis elegans Hypothetical
           protein W08G11.3b protein.
          Length = 511

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
 Frame = -1

Query: 460 SLPGENL-NNATIEAQSELINIDAPDLINSDLLTLKDPTHPIS-SNIVSSDKQ 308
           S+  E+L  ++TIE+ S+ I+I A +  + + L L +PT  IS S ++  D+Q
Sbjct: 453 SISSEDLITSSTIESTSDEISIAACNQFSEEDLLLAEPTDMISPSQLLDLDEQ 505


>Z92817-2|CAJ43913.1|  510|Caenorhabditis elegans Hypothetical
           protein W08G11.3a protein.
          Length = 510

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
 Frame = -1

Query: 460 SLPGENL-NNATIEAQSELINIDAPDLINSDLLTLKDPTHPIS-SNIVSSDKQ 308
           S+  E+L  ++TIE+ S+ I+I A +  + + L L +PT  IS S ++  D+Q
Sbjct: 452 SISSEDLITSSTIESTSDEISIAACNQFSEEDLLLAEPTDMISPSQLLDLDEQ 504


>Z99942-2|CAB17072.1|  468|Caenorhabditis elegans Hypothetical
           protein H13N06.3a protein.
          Length = 468

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -3

Query: 254 LFNADISNDVTSSLAFVPSSKSSQRPDCSDNTSDDT 147
           +F   +S D++  LA  P  ++  RPDC  N   ++
Sbjct: 1   MFTFRLSTDLSLKLAKFPPGRAGSRPDCPMNCEKES 36


>Z83220-4|CAC42264.1|  617|Caenorhabditis elegans Hypothetical
           protein C34B7.4 protein.
          Length = 617

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/67 (25%), Positives = 31/67 (46%)
 Frame = -3

Query: 203 PSSKSSQRPDCSDNTSDDTSPCSTDYHEASALDLVQSLDEISSCDSSNFSQSRDISPVNN 24
           PSS SS+R +    ++DDT   S    + + LD  ++ +E ++             PV +
Sbjct: 35  PSSSSSKRKNLRKPSTDDTPSSSEPLSKKNRLDSTETAEEDNTRRRRTLKHGEVALPVCS 94

Query: 23  QLKKKKK 3
             K+ +K
Sbjct: 95  FCKEDQK 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,803,130
Number of Sequences: 27780
Number of extensions: 317048
Number of successful extensions: 1093
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1882685842
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)