Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120379.Seq
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee homeobox-...    23   2.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.2  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   9.7  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    21   9.7  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    21   9.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   9.7  

>M29488-1|AAA27723.1|   86|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H55. ).
          Length = 86

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = -1

Query: 538 LWNTKRRTRWIEYMPLTDLDTIPQYMS 458
           +W   RR +W +   +  ++ +P +MS
Sbjct: 54  IWFQNRRMKWKKEHKMASMNIVPYHMS 80


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
 Frame = -3

Query: 251 FNADISNDVTSS-----LAFVPSSKSSQRPDCSDNTSDDTS 144
           FN +I  + + S     +  +PS K +  P CS    + TS
Sbjct: 864 FNPNIEEEASDSAQGRAILKIPSYKPASTPGCSSKNGEPTS 904


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -2

Query: 657 IMDRVNNNEIFYDGVPLIPSNDPWSVYNN 571
           ++ + N N+ F     LI  ++ W VYNN
Sbjct: 135 LLKKRNENDPFLKR--LITGDEKWVVYNN 161


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 543 VNKTLIQCYHYCKL 584
           VN+  I CY YC L
Sbjct: 65  VNEPSITCYMYCLL 78


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 543 VNKTLIQCYHYCKL 584
           VN+  I CY YC L
Sbjct: 65  VNEPSITCYMYCLL 78


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 442 NFLQVNSYIVESYLNL*AAYILSILFSAWYSIV 540
           N L  NSY+  SY+   A  I+ I+    Y+++
Sbjct: 804 NLLVCNSYVDASYMIAFAYPIMLIVVCTVYAVL 836


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,371
Number of Sequences: 438
Number of extensions: 4095
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)