Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120379.Seq
(781 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g53370.1 68414.m06050 F-box family protein contains F-box dom... 31 1.1
At3g07350.1 68416.m00876 expressed protein contains Pfam profile... 30 2.0
At5g55500.1 68418.m06912 beta-(1,2)-xylosyltransferase (XYLT) id... 29 3.5
At4g38070.1 68417.m05377 bHLH family protein contains Pfam profi... 29 3.5
At3g50240.1 68416.m05494 kinesin motor protein-related KINESIN-L... 29 3.5
At1g26110.1 68414.m03186 expressed protein 29 3.5
At5g09210.1 68418.m01043 hypothetical protein 29 4.6
At4g31350.1 68417.m04446 expressed protein contains Pfam profile... 29 4.6
At4g00440.1 68417.m00061 expressed protein 29 4.6
At1g31460.1 68414.m03852 expressed protein 29 4.6
At5g26910.1 68418.m03209 expressed protein 28 6.0
At4g12760.1 68417.m02003 expressed protein ; expression support... 28 6.0
At5g23150.1 68418.m02707 PWWP domain-containing protein identica... 28 8.0
At1g49870.1 68414.m05591 expressed protein ; expression supporte... 28 8.0
>At1g53370.1 68414.m06050 F-box family protein contains F-box domain
Pfam:PF00646
Length = 355
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +1
Query: 178 GLCELLLLGTKAKLDVTSFDISALNNLPFLLTILDFHKNQYYSLVCHL 321
G+C L L K KL V +D+ + N + D K+++ +C L
Sbjct: 238 GMCNLRLFNCKGKLGVHQYDVQSRNEKLVFHVLEDAEKHKWSKSICIL 285
>At3g07350.1 68416.m00876 expressed protein contains Pfam profile
PF04720: Protein of unknown function (DUF506)
Length = 298
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -3
Query: 200 SSKSSQRPDCSDNTSDDTSPCSTDYHEASALDLVQSLDEISS-CDSSNFSQS 48
SS S D ++ DD SPC +D + D V ++D+ S CD + S S
Sbjct: 27 SSGSEHTGDGIEDYEDDDSPCLSDLVQGFLEDEVDTVDDESCWCDQDSGSDS 78
>At5g55500.1 68418.m06912 beta-(1,2)-xylosyltransferase (XYLT)
identical to SP|Q9LDH0
Length = 534
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = -2
Query: 747 MQLSNMLMLPENYLAFEDSFMSAWDYKPNIIMDRVNNNEIFYDGVPLIPSNDPWS 583
M L N L L ++ SF P+I VNN P++PS PW+
Sbjct: 15 MLLLNSLFLIIYFVFHSSSFSPEQSQPPHIYHVSVNNQSAIQKPWPILPSYLPWT 69
>At4g38070.1 68417.m05377 bHLH family protein contains Pfam profile:
PF00010 helix-loop-helix DNA-binding domain; PMID:
12679534; putative bHLH131 transcription factor
Length = 1513
Score = 29.1 bits (62), Expect = 3.5
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Frame = +1
Query: 28 LTGEISLLCEKLELSQDDIS--SKL*TKSRADASW*SVEQGEVSSLVLSEQSGLCELLLL 201
L GEIS L +KLE S + +S + TKSRA+ +Q E+ + Q L
Sbjct: 905 LEGEISSLSQKLETSNESVSCFRQEATKSRAEL---ETKQTELKEVTTQMQEKLRTSEAE 961
Query: 202 GTKAKLDVTSFDISALNNLPFLLTILD 282
T+ +V S N L F+ + D
Sbjct: 962 KTELVKEVASLSTEKRNLLSFISEMED 988
>At3g50240.1 68416.m05494 kinesin motor protein-related KINESIN-LIKE
PROTEIN KIF4, Homo sapiens, EMBL:AF179308
Length = 1051
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -3
Query: 224 TSSLAFVPSSKSSQRPDCSDNTSDDTSPCSTDYHEAS 114
++S ++ SS+SS + +N SDD S S+ YH A+
Sbjct: 914 STSSSYSGSSRSSSKHYGDNNASDDPSSPSSTYHRAT 950
>At1g26110.1 68414.m03186 expressed protein
Length = 611
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/67 (29%), Positives = 33/67 (49%)
Frame = -1
Query: 460 SLPGENLNNATIEAQSELINIDAPDLINSDLLTLKDPTHPISSNIVSSDKQVSNIDFCEN 281
+L G+ +++ ++EL I+A + N D D +SSN + + Q S F E
Sbjct: 488 TLDGDEDDDSPTVDEAELPKIEAKPVYNKD-----DFFDSLSSNTIDRESQNSRPRFSEQ 542
Query: 280 RESSTET 260
R+ TET
Sbjct: 543 RKLDTET 549
>At5g09210.1 68418.m01043 hypothetical protein
Length = 603
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -3
Query: 167 DNTSDDTSPCSTDYHEASALDLVQSLDEISSCDSSNFSQ 51
D+++DD S C T +E + L+Q D+I S S +S+
Sbjct: 264 DSSTDDESDCETSAYEEARDSLLQRADKIFSDASVVYSE 302
>At4g31350.1 68417.m04446 expressed protein contains Pfam profile
PF03267: Arabidopsis protein of unknown function, DUF266
Length = 711
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/28 (35%), Positives = 21/28 (75%)
Frame = -3
Query: 284 KSRIVNRNGRLFNADISNDVTSSLAFVP 201
K+R++ + ++ NA+IS+ +T +L+F P
Sbjct: 233 KNRVLGGSNKVVNAEISDKLTGNLSFAP 260
>At4g00440.1 68417.m00061 expressed protein
Length = 831
Score = 28.7 bits (61), Expect = 4.6
Identities = 24/85 (28%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Frame = -1
Query: 487 DLDTIPQYMS--LPGENLNNATIEAQSELINIDAPDLINSDLLTLKDPTHPISSNIVSSD 314
+LD +P+ S L G+ + +EAQ E D INS +L++ P+SS++ S
Sbjct: 531 ELDEVPEEASSTLIGDL---SKVEAQDE-----QRDSINSKQTSLEESQPPLSSSVASPS 582
Query: 313 KQVSNIDFCENRESSTETEDYSTPI 239
++ + C + + T+ ++S+PI
Sbjct: 583 HCLAQTEEC--KSAITDFPEWSSPI 605
>At1g31460.1 68414.m03852 expressed protein
Length = 301
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -3
Query: 71 DSSNFSQSRDISPVNNQLKKK 9
DS N S+S+ +SPV Q KKK
Sbjct: 140 DSGNISESKILSPVKQQTKKK 160
>At5g26910.1 68418.m03209 expressed protein
Length = 900
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = -3
Query: 263 NGRL-FNADISNDVTSSLAFVPSSKSSQRPDCSDNTSDDTSPCSTDYHEASALDLVQSLD 87
NG + F+++ + L V S+S DC+ + HE S++ V D
Sbjct: 596 NGMISFSSEYEKSTQNGLRKV-LSESESVSDCTSFYDKQKFQIQAEEHEVSSISTVTEAD 654
Query: 86 EISSCDSSNFSQSR 45
++ S S FS R
Sbjct: 655 DLRSSCSKGFSDCR 668
>At4g12760.1 68417.m02003 expressed protein ; expression supported
by MPSS
Length = 227
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = -1
Query: 478 TIPQYMSLPGENLNNATIEAQSELINIDAPDLINSDLLTLKDPTHPISSN 329
TIP+ S + + +I Q E+IN D+++ +L ++D + +S N
Sbjct: 10 TIPKRTSNKSQPDFDYSIRKQKEIINCAFQDIVSDELKKIEDSSRNLSGN 59
>At5g23150.1 68418.m02707 PWWP domain-containing protein identical to
cDNA putative transcription factor (HUA2) GI:4868119;
contains Pfam profile PF00855: PWWP domain
Length = 1392
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = -3
Query: 167 DNTSDDTSPCSTDYHEASALDLVQSLDEISSCDSSNFSQSRDISPVNNQLK 15
D+ DD P S SA + V +LD++ D+S+ R + V+++L+
Sbjct: 965 DDEEDDDLPTSQKEKSTSAGERVSALDDLEIHDTSSDKCHRVLEDVDHELE 1015
>At1g49870.1 68414.m05591 expressed protein ; expression supported
by MPSS
Length = 828
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = -3
Query: 194 KSSQRPDCSDNTSDDTSPCSTDYHEASALDLVQSLD-EISSCDSSNFSQSRDISPVNNQ 21
K S+ PD DN D S L ++ +D E++ C+ +++ + R + Q
Sbjct: 245 KISENPDVRDNHEITEMSSECDTESDSELGILHKVDEEVAECEETSYFKMRQLKVKRRQ 303
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,575,403
Number of Sequences: 28952
Number of extensions: 282401
Number of successful extensions: 868
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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