Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120378.Seq
         (639 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P41430 Cluster: Uncharacterized 36.6 kDa protein in EGT...   187   2e-46
UniRef50_Q0N472 Cluster: DNA binding protein; n=1; Clanis biline...    44   0.002
UniRef50_Q77K94 Cluster: Dbp; n=3; Nucleopolyhedrovirus|Rep: Dbp...    42   0.013
UniRef50_O10298 Cluster: Uncharacterized 34.6 kDa protein; n=7; ...    41   0.022
UniRef50_Q80LR8 Cluster: DNA binding protein; n=1; Adoxophyes ho...    41   0.029
UniRef50_Q9YMS7 Cluster: LdOrf-47; ssDNA binding protein; n=1; L...    36   0.82 
UniRef50_A7E9Z8 Cluster: Putative uncharacterized protein; n=1; ...    34   3.3  
UniRef50_A2XZ45 Cluster: Putative uncharacterized protein; n=1; ...    33   5.8  
UniRef50_A5AAZ9 Cluster: Contig An08c0230, complete genome. prec...    33   5.8  
UniRef50_P20676 Cluster: Nucleoporin NUP1; n=2; Saccharomyces ce...    33   5.8  
UniRef50_Q0VM37 Cluster: 2-hydroxychromene-2-carboxylate isomera...    33   7.7  
UniRef50_Q01UF5 Cluster: Putative uncharacterized protein precur...    33   7.7  
UniRef50_A2E4N8 Cluster: FHA domain containing protein; n=1; Tri...    33   7.7  

>UniRef50_P41430 Cluster: Uncharacterized 36.6 kDa protein in
           EGT-IAP1 intergenic region; n=5;
           Nucleopolyhedrovirus|Rep: Uncharacterized 36.6 kDa
           protein in EGT-IAP1 intergenic region - Autographa
           californica nuclear polyhedrosis virus (AcMNPV)
          Length = 316

 Score =  187 bits (455), Expect = 2e-46
 Identities = 82/89 (92%), Positives = 85/89 (95%)
 Frame = +3

Query: 255 DETGVMCYFTPSSVQLEPRELTKMLWQEQMAINVKRGNFSILNCSCFEGRFLKNEFCRLA 434
           DETGVMCYFTPSS+QLEP ELTKMLWQEQMAINVKRGNFSILNCSCFEGRFLKNEFCRL+
Sbjct: 45  DETGVMCYFTPSSIQLEPHELTKMLWQEQMAINVKRGNFSILNCSCFEGRFLKNEFCRLS 104

Query: 435 NLNSLHEWEDKLYPEPDKNIVVLEPPTAR 521
           NLNSLHEWEDKLYPEPDKNIVVLEP   +
Sbjct: 105 NLNSLHEWEDKLYPEPDKNIVVLEPANGK 133



 Score = 69.7 bits (163), Expect = 5e-11
 Identities = 37/46 (80%), Positives = 38/46 (82%), Gaps = 2/46 (4%)
 Frame = +1

Query: 121 MATKRKIGD--SSSDDNQPKRERVESGEDQQLVPYNNNNGAAFNVK 252
           MATKRKIGD  SSSDDNQPKRER E GEDQQLVPYN+    AFNVK
Sbjct: 1   MATKRKIGDGYSSSDDNQPKRERSEGGEDQQLVPYNS---GAFNVK 43



 Score = 57.6 bits (133), Expect = 2e-07
 Identities = 23/25 (92%), Positives = 24/25 (96%)
 Frame = +1

Query: 550 GQACGFWFSDFGTIKRAKSNFGQFF 624
           G+ CGFWFSDFGTIKRAKSNFGQFF
Sbjct: 144 GKPCGFWFSDFGTIKRAKSNFGQFF 168



 Score = 54.8 bits (126), Expect = 2e-06
 Identities = 26/43 (60%), Positives = 27/43 (62%)
 Frame = +2

Query: 509 ANGKTTYTIGPRVQGKPADFGFPTLEP*NVPKATLASFFSIQY 637
           ANGKTTYTIGPRVQGKP  F F         K+    FFSIQY
Sbjct: 130 ANGKTTYTIGPRVQGKPCGFWFSDFGTIKRAKSNFGQFFSIQY 172


>UniRef50_Q0N472 Cluster: DNA binding protein; n=1; Clanis bilineata
           nucleopolyhedrosis virus|Rep: DNA binding protein -
           Clanis bilineata nucleopolyhedrosis virus
          Length = 318

 Score = 44.4 bits (100), Expect = 0.002
 Identities = 28/86 (32%), Positives = 45/86 (52%)
 Frame = +3

Query: 267 VMCYFTPSSVQLEPRELTKMLWQEQMAINVKRGNFSILNCSCFEGRFLKNEFCRLANLNS 446
           ++C F    V ++ R++T +   +    N+KRGN ++L+C    G  L N    L    +
Sbjct: 47  LLCVFN-EPVAIKRRKVTCV---DIFEYNLKRGNTTLLHCDT-PGNDLVNLLASLKYKLN 101

Query: 447 LHEWEDKLYPEPDKNIVVLEPPTARL 524
           L EW D++ PEP   IVV +P   R+
Sbjct: 102 LDEWLDRMLPEPHAKIVVTKPVAPRV 127


>UniRef50_Q77K94 Cluster: Dbp; n=3; Nucleopolyhedrovirus|Rep: Dbp -
           Helicoverpa armigera NPV
          Length = 323

 Score = 41.9 bits (94), Expect = 0.013
 Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
 Frame = +3

Query: 249 ETDETGVM-CYFTPSSVQLEPRELTKMLWQEQMAINVKRGNFSILNCSC-FEGRFLKNEF 422
           E DE+  M C F P   Q E R +T   W ++   N+++ N ++L C   F   F    F
Sbjct: 50  EYDESDKMLCIFKP---QTETRSIT---WVDKFTHNLQKKNLTVLRCHTPFNKLFESLGF 103

Query: 423 CRLANLNSLHEWEDKLYPEPDKNIVV--LEPP 512
             L    SL  W DKLYP+ +  +V+  L+PP
Sbjct: 104 --LNESISLESWIDKLYPQVNDKVVIEPLKPP 133


>UniRef50_O10298 Cluster: Uncharacterized 34.6 kDa protein; n=7;
           Nucleopolyhedrovirus|Rep: Uncharacterized 34.6 kDa
           protein - Orgyia pseudotsugata multicapsid polyhedrosis
           virus (OpMNPV)
          Length = 300

 Score = 41.1 bits (92), Expect = 0.022
 Identities = 25/89 (28%), Positives = 48/89 (53%)
 Frame = +3

Query: 240 F*RETDETGVMCYFTPSSVQLEPRELTKMLWQEQMAINVKRGNFSILNCSCFEGRFLKNE 419
           F  + +  G +  FTP +     + L+   WQ  + +N +  +FS +N    + ++LK++
Sbjct: 32  FLMQVENDGALRKFTPINAMRAQQNLS---WQCLVLLNCQALDFSAINFHYGDLQYLKDK 88

Query: 420 FCRLANLNSLHEWEDKLYPEPDKNIVVLE 506
           F  L NL++ +EW  +  PE DK + ++E
Sbjct: 89  FTELQNLSNYYEWRKQERPE-DK-VCIME 115



 Score = 34.7 bits (76), Expect = 1.9
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = +2

Query: 506 AANGKTTYTIGPRVQGKPADFGFPTLEP*NVPKATLASFFS 628
           AA GK TYTIG RV+G+P  F        +  K+T   F S
Sbjct: 116 AAVGKCTYTIGLRVKGRPNGFAIAEFGSVHRSKSTFGQFLS 156


>UniRef50_Q80LR8 Cluster: DNA binding protein; n=1; Adoxophyes
           honmai NPV|Rep: DNA binding protein - Adoxophyes honmai
           nucleopolyhedrovirus
          Length = 322

 Score = 40.7 bits (91), Expect = 0.029
 Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
 Frame = +3

Query: 291 SVQLEPRELTKMLWQEQMAINVKRG-NFSILNC-SCFEGRFLKNEFCRLANLNSLHEWED 464
           + Q E R +T   W E+M  N+ +G N S++NC + F    LK     +    +  ++E+
Sbjct: 63  NTQPEDRNIT---WAEKMIYNLSKGKNSSVVNCMTSFHQNQLKMALDFVNTTYNFAQYEN 119

Query: 465 KLYPEPDKNIVVLEPPTARL 524
           +LYPEP   I V  P   +L
Sbjct: 120 ELYPEPISKITVEAPKPPKL 139


>UniRef50_Q9YMS7 Cluster: LdOrf-47; ssDNA binding protein; n=1;
           Lymantria dispar MNPV|Rep: LdOrf-47; ssDNA binding
           protein - Lymantria dispar multicapsid nuclear
           polyhedrosis virus (LdMNPV)
          Length = 257

 Score = 35.9 bits (79), Expect = 0.82
 Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
 Frame = +3

Query: 330 WQEQMAINVKRGNFSILNCSCFEGRFLKNEFCRLANLNSLHEWEDKLYPEPDK----NIV 497
           W +++  N+KRGNF+++ C     + L N   ++ +  ++ ++  +LYP+  +     +V
Sbjct: 7   WIDELMYNLKRGNFTVVTCDS-PNKNLLNSLLKVQHKLNIGQYMQQLYPDVSEELAPKLV 65

Query: 498 VLEPPTARL 524
           + +P   RL
Sbjct: 66  IRKPKPPRL 74


>UniRef50_A7E9Z8 Cluster: Putative uncharacterized protein; n=1;
            Sclerotinia sclerotiorum 1980|Rep: Putative
            uncharacterized protein - Sclerotinia sclerotiorum 1980
          Length = 1677

 Score = 33.9 bits (74), Expect = 3.3
 Identities = 16/27 (59%), Positives = 18/27 (66%)
 Frame = -3

Query: 541  WTDGVRSLAVGGSNTTIFLSGSGYNLS 461
            WTDG  S  VGGS+ TI  SG+  NLS
Sbjct: 1355 WTDGPSSTGVGGSDGTIGTSGASDNLS 1381


>UniRef50_A2XZ45 Cluster: Putative uncharacterized protein; n=1;
           Oryza sativa (indica cultivar-group)|Rep: Putative
           uncharacterized protein - Oryza sativa subsp. indica
           (Rice)
          Length = 333

 Score = 33.1 bits (72), Expect = 5.8
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = +3

Query: 354 VKRGNFSILNCSCFEGRFLKNEFCRLANLNS--LHEWEDKLYPEPDKNIVVLEPPTARLR 527
           ++  NF++L  SC EG+F   E   L  L S  LH +E +  P     +  L P    L 
Sbjct: 93  IRDRNFNMLTDSCLEGQFSNEEGTELVRLASRCLH-YEPRERPNVRSLVQALAPLQKDLE 151

Query: 528 TPSVQ 542
           TPS +
Sbjct: 152 TPSYE 156


>UniRef50_A5AAZ9 Cluster: Contig An08c0230, complete genome.
           precursor; n=1; Aspergillus niger|Rep: Contig An08c0230,
           complete genome. precursor - Aspergillus niger
          Length = 517

 Score = 33.1 bits (72), Expect = 5.8
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +1

Query: 412 KTNFVDWLI*IVCTNGKTSCIPSPIKISWCWSRQRQDYVHHRSKSAGQACGFWF 573
           KT+ V WLI IVC    +  +P  +K  +   + +  +++    + G  CG++F
Sbjct: 402 KTSVVAWLIRIVCDFAVSYSLPYLLKAPYADLQSKVGFIYGSLAALGVVCGYFF 455


>UniRef50_P20676 Cluster: Nucleoporin NUP1; n=2; Saccharomyces
           cerevisiae|Rep: Nucleoporin NUP1 - Saccharomyces
           cerevisiae (Baker's yeast)
          Length = 1076

 Score = 33.1 bits (72), Expect = 5.8
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 94  PQQTAHVGSMATKRKIGDSSSDDNQPKRE-RVESGEDQQLVPYNNNNGAAFNVKQTKR 264
           P+ TA + S   + + GD   D+N+PKR+ R+   ED    P   + G   + K+TK+
Sbjct: 441 PKSTAPIFSFGKQEENGDEGDDENEPKRKRRLPVSEDTNTKPL-FDFGKTGDQKETKK 497


>UniRef50_Q0VM37 Cluster: 2-hydroxychromene-2-carboxylate isomerase,
           putative; n=1; Alcanivorax borkumensis SK2|Rep:
           2-hydroxychromene-2-carboxylate isomerase, putative -
           Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM
           11573)
          Length = 438

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 496 WCWSRQRQDYVHHRSKSAGQACGFWFSDFGTIKRAK 603
           W WS +R D++ HR  + G     W   +G  KRA+
Sbjct: 198 WYWSVERLDHLGHRLNALGLGSADWPLPYGRAKRAR 233


>UniRef50_Q01UF5 Cluster: Putative uncharacterized protein
           precursor; n=1; Solibacter usitatus Ellin6076|Rep:
           Putative uncharacterized protein precursor - Solibacter
           usitatus (strain Ellin6076)
          Length = 427

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 598 HVLWFQSRKTKIRRLALHSWTDGVRSLAVGGSNTTIFL 485
           H L  + R+T  R   + +W DGVR  A GG     F+
Sbjct: 325 HELRLRQRETLARDAEVRTWMDGVRRFAAGGKRVNAFV 362


>UniRef50_A2E4N8 Cluster: FHA domain containing protein; n=1;
           Trichomonas vaginalis G3|Rep: FHA domain containing
           protein - Trichomonas vaginalis G3
          Length = 342

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = +3

Query: 423 CRLANLNSLHEWEDKLYPEPDKNIVVLEPPTARLRTPSVQECRASLRILVFRLWNHKTCQ 602
           CR   L S    E+ ++ E D  ++  EP    LR   VQ C+    + +F+ W+ K   
Sbjct: 190 CRATFLKSQLSPEEAIFTENDIQVITTEP---FLRELEVQNCKKIKAVNIFKQWDQKHAI 246

Query: 603 KQLWPVF 623
           +  W +F
Sbjct: 247 R-FWNLF 252


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 672,798,867
Number of Sequences: 1657284
Number of extensions: 13969331
Number of successful extensions: 45903
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 43753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45873
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47711253245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)