Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120378.Seq
(639 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 27 1.7
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca... 27 3.0
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 27 3.0
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit... 27 3.0
SPCC1183.06 |ung1||uracil DNA N-glycosylase Ung1|Schizosaccharom... 26 4.0
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 26 5.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 5.3
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 7.0
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||... 25 7.0
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact... 25 7.0
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 25 9.2
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 124 ATKRKIGDSSSDDNQPKRERVES 192
A+KRKI SSSDD++ K E S
Sbjct: 131 ASKRKIARSSSDDSESKVESTNS 153
>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
cancers-1 homolog 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 676
Score = 26.6 bits (56), Expect = 3.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -3
Query: 502 NTTIFLSGSGYNLSSHSCKLFKLASRQNSF 413
NT ++ +G G ++ +H +LFK R F
Sbjct: 290 NTHLYANGEGQHIKNHLLELFKKLHRTQDF 319
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 26.6 bits (56), Expect = 3.0
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = +3
Query: 378 LNCSCFEGRFLKNEFCRLANLNSLHEWEDKLYPEPDKNIVVLEPPTARLRTP 533
LN SC + RFL+N L +++++ + KL PEP +N+ L+ T L P
Sbjct: 759 LNLSCTDYRFLEN----LIDVDTIQNF-FKL-PEPVQNVTDLQSDTVLLVNP 804
>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 542
Score = 26.6 bits (56), Expect = 3.0
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = -3
Query: 568 KIRRLALH--SWTDGVRSLAVGGSNTTIFLSGSGYNLSSHSCKL 443
K++RL L WTD R+ + N + G N + ++C L
Sbjct: 450 KLKRLMLERIDWTDTSRNSIIAQGNKLVDTEGRELNYTENTCNL 493
>SPCC1183.06 |ung1||uracil DNA N-glycosylase
Ung1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 322
Score = 26.2 bits (55), Expect = 4.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 128 LNARLAIRAATTTSQSGKEWK 190
LNA L +RA S SGK W+
Sbjct: 200 LNASLTVRAHQAASHSGKGWE 220
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 25.8 bits (54), Expect = 5.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 541 WTDGVRSLAVGGSNTTIFLSGSGYN 467
W DG VGG+NTT+ S +N
Sbjct: 1185 WQDGSGKKFVGGTNTTLIALPSVFN 1209
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 5.3
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -3
Query: 469 NLSSHSCKLFKLASRQNSFFKNLPSKQLQFSIEK 368
N + C+ + +NSFFKNL S +SI K
Sbjct: 1202 NTVKYLCEYDSIDKVRNSFFKNLNSFYEMYSIAK 1235
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.4 bits (53), Expect = 7.0
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = -2
Query: 254 CFTLKAAPLLLLYGTSCWSSPLSTLSRFGWLSSLLESPILRLVAMLPTCAVC 99
C +L P+L + + +SP + +L+S + I R+ A L C C
Sbjct: 538 CPSLAVPPILTILASLQHTSPTQHKAVLEFLNSCINRCISRVFAYLDVCVDC 589
>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 393
Score = 25.4 bits (53), Expect = 7.0
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -2
Query: 344 HLLLPQHLCQLAWLQLNGRRR 282
H+++PQ Q +W+ +GR R
Sbjct: 330 HVVIPQDAQQSSWISFDGRNR 350
>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 648
Score = 25.4 bits (53), Expect = 7.0
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +3
Query: 273 CYFTPSSVQLEPRELTKMLWQ-EQMAINVKRGNFSILNCSCFEGRFLKNEFCRLANLNSL 449
C S + R L +L EQ++ V + FS N E+C+ ++NS
Sbjct: 371 CSKIQSEIYSTNRNLLSVLQTVEQISKEVDKEYFSSTNHQLIRSEI--GEYCKTLDINSC 428
Query: 450 HEW 458
EW
Sbjct: 429 REW 431
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 25.0 bits (52), Expect = 9.2
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -1
Query: 474 DTTCLPIRANYSN*PVDKIRFSKICLRNNYNSVLKSC 364
DT L N+S + ++ F++ LRN +L C
Sbjct: 1226 DTPLLEFSKNFSGGQIQRLAFARALLRNPRLLILDEC 1262
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,791,532
Number of Sequences: 5004
Number of extensions: 58905
Number of successful extensions: 172
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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