Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120378.Seq
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1639 + 34978498-34978585,34979049-34979343,34980070-349801... 33 0.19
01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,138... 29 2.4
07_03_1732 + 29109612-29110623,29110712-29110786,29111176-291113... 29 3.1
04_03_0819 + 20018496-20019487,20019587-20019721,20019834-200199... 29 3.1
02_05_0919 - 32721734-32722954,32723424-32723729,32724415-32724492 29 3.1
03_03_0025 + 13848450-13849420,13850921-13851131,13851327-138514... 29 4.1
01_07_0379 + 43177978-43178572,43178643-43178674 29 4.1
11_06_0228 + 21497248-21498143,21499831-21501700,21501934-215020... 28 5.4
09_03_0111 - 12440818-12441129,12441242-12441585,12441663-124419... 28 5.4
02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121... 28 7.2
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 28 7.2
06_01_0996 + 7746358-7746493,7747102-7747262,7747586-7747647,774... 27 9.5
03_01_0282 + 2181598-2183124 27 9.5
>04_04_1639 +
34978498-34978585,34979049-34979343,34980070-34980107,
34980655-34980788,34980868-34980973,34981451-34981536,
34981962-34982150,34982477-34982641,34982898-34982921,
34983235-34983348,34983605-34983850
Length = 494
Score = 33.1 bits (72), Expect = 0.19
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +3
Query: 354 VKRGNFSILNCSCFEGRFLKNEFCRLANLNS--LHEWEDKLYPEPDKNIVVLEPPTARLR 527
++ NF++L SC EG+F E L L S LH +E + P + L P L
Sbjct: 254 IRDRNFNMLTDSCLEGQFSNEEGTELVRLASRCLH-YEPRERPNVRSLVQALAPLQKDLE 312
Query: 528 TPSVQ 542
TPS +
Sbjct: 313 TPSYE 317
>01_01_0161 -
1385408-1385566,1385815-1385943,1386164-1386322,
1387228-1387571,1387641-1387905,1387998-1388075,
1388207-1388260,1389341-1389361,1389453-1389578,
1389696-1389863,1389923-1390313,1390629-1390710,
1391175-1391536,1391806-1392630,1392956-1393476
Length = 1227
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -3
Query: 625 KKTGQSCFWHVLWFQSRKTKIRRLALHSWTDGVRSLAVGGSNTT 494
KK G S + + F S TK + H+W++ + + GSNTT
Sbjct: 430 KKIGPSMVDNKIIFGSVVTK-KEAIFHTWSEEIYGFGISGSNTT 472
>07_03_1732 +
29109612-29110623,29110712-29110786,29111176-29111333,
29111714-29111937,29112136-29112745
Length = 692
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +3
Query: 432 ANLNSLHEWEDKLYPEPDKNIVVLEPPTARLRTPSVQECRASLRILV 572
+ L+ L+ WE+KLY E N + + + QE R +ILV
Sbjct: 398 STLDKLYAWEEKLYDEVKVNSAICRRYDEKCKQLRDQESRGKNQILV 444
>04_03_0819 +
20018496-20019487,20019587-20019721,20019834-20019978,
20020135-20020416,20020649-20020910,20021028-20021224,
20021315-20021425,20022341-20022392,20022442-20022584,
20023121-20023210,20023300-20023800,20024108-20024176,
20024866-20025011,20025475-20025530,20026140-20026286,
20027405-20027530,20027608-20027876,20028026-20028127
Length = 1274
Score = 29.1 bits (62), Expect = 3.1
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +1
Query: 88 LEPQQTAHVGSMATKRKIGDSSSDDNQPKR--ERVES-GEDQQLVPYNNNN-GAAFNVKQ 255
+ PQ A S A KR D S+++ P+R +R+ S G + +P+ G +VK
Sbjct: 745 INPQFIASFASAAGKRCNQDLDSEESDPERTWQRLRSTGIFRDAIPHPYERIGHPMHVKV 804
Query: 256 TKRA*CAILRRRPFNWSH 309
+R + L R F W++
Sbjct: 805 AQRRFESRLGRHSFGWTY 822
>02_05_0919 - 32721734-32722954,32723424-32723729,32724415-32724492
Length = 534
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -2
Query: 272 HYARFVCFTLKAAPLLLLYGTSCWSSPLSTLSRFGWLSSLLESP 141
H +RF+ + P L + T W+ P++ WLS L SP
Sbjct: 395 HVSRFLTPPPQQPPQQLSFSTRDWAGPVAYCQAKNWLSDELMSP 438
>03_03_0025 +
13848450-13849420,13850921-13851131,13851327-13851459,
13851576-13851832
Length = 523
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 92 NHSRQRTSVAWQLNARLAIRAATTTSQSGKEWKVVRTSSW 211
+H R +S + +ARL R A TS SG+ W+ V + W
Sbjct: 174 HHRRNSSSSSSSASARLVTRPAAATSGSGR-WRSVFGAVW 212
>01_07_0379 + 43177978-43178572,43178643-43178674
Length = 208
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = -2
Query: 254 CFTLKAAPLLLLYG-TSCWSSPLSTLSRFGWLSSLLESPILRLVAMLPTCAVC 99
C+ AP +L YG SC + L L R ++L +L L+ + +CA C
Sbjct: 112 CYRWSNAPGVLCYGCDSCKAGVLEQLRRHWHNVTILNVVLLLLLILFYSCACC 164
>11_06_0228 +
21497248-21498143,21499831-21501700,21501934-21502038,
21502139-21502232,21502335-21502363
Length = 997
Score = 28.3 bits (60), Expect = 5.4
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = -3
Query: 580 SRKTKIRRLALH-SWTDGVRS-LAVGGSNTTIF 488
S++T IRR+ALH SW G + LAVG ++ F
Sbjct: 552 SQRTTIRRIALHKSWNQGKNNDLAVGMTHLRSF 584
>09_03_0111 -
12440818-12441129,12441242-12441585,12441663-12441989,
12443444-12443602,12443687-12443784,12444745-12444821
Length = 438
Score = 28.3 bits (60), Expect = 5.4
Identities = 8/26 (30%), Positives = 15/26 (57%)
Frame = +3
Query: 348 INVKRGNFSILNCSCFEGRFLKNEFC 425
+ + + +CSC+ G ++KN FC
Sbjct: 72 MGICKNTIGSFDCSCYPGSYMKNGFC 97
>02_01_0177 +
1214226-1214294,1214707-1214794,1216095-1216308,
1216413-1216738,1216860-1217013,1217377-1217438,
1218078-1218133,1219456-1221279,1221775-1222698,
1222855-1222866
Length = 1242
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +3
Query: 396 EGRFLK--NEFCRLANLNSLHEWEDKLYPEPDKNIVVLEPPT 515
EGR + N+F + A + S W K P PD +V+E PT
Sbjct: 199 EGRAVAALNKFGQNAKMTSDPMWMKKALPPPDPPAMVVEKPT 240
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 475 PSPIKI-SWCWSRQRQDYVHHRSKSAGQACGFWFSDFGTIKRAKSN 609
P+PI+ SW + Q QD V +G+ G+ F IKR ++N
Sbjct: 173 PTPIQAQSWPIALQCQDVVAIAKTGSGKTLGYLLPGFMHIKRLQNN 218
>06_01_0996 +
7746358-7746493,7747102-7747262,7747586-7747647,
7748142-7748595,7748994-7749134,7749444-7749633,
7749842-7750530,7750605-7750804,7751210-7751375,
7751850-7752046,7752162-7752396
Length = 876
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Frame = +1
Query: 91 EP-QQTAHVGSMATKRKIGDSSSDDNQ---PKRER 183
EP ++T V A KR IGD +DD + PKR R
Sbjct: 63 EPSKKTRGVSQRAKKRSIGDDHADDTEQPPPKRSR 97
>03_01_0282 + 2181598-2183124
Length = 508
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 429 LANLNSLHEWEDKLYPEPDKNIVVLEPPTARLR 527
LAN N LHEW + N + PP++ +R
Sbjct: 49 LANCNHLHEWITSVLTVTPLNFRFIGPPSSDMR 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,258,039
Number of Sequences: 37544
Number of extensions: 397105
Number of successful extensions: 1296
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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