Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120378.Seq
(639 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_35814| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_7993| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.79
SB_52954| Best HMM Match : VacA2 (HMM E-Value=9.3) 30 1.8
SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15) 28 5.6
SB_10606| Best HMM Match : I-set (HMM E-Value=0) 28 5.6
SB_42686| Best HMM Match : Pkinase (HMM E-Value=0) 28 7.4
SB_52815| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_39292| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25) 27 9.7
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10) 27 9.7
>SB_35814| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 33.1 bits (72), Expect = 0.20
Identities = 14/58 (24%), Positives = 30/58 (51%)
Frame = +1
Query: 91 EPQQTAHVGSMATKRKIGDSSSDDNQPKRERVESGEDQQLVPYNNNNGAAFNVKQTKR 264
EP +++H ++ S +D+ + KR+R E G+ + +N G + +K+ K+
Sbjct: 166 EPSESSHADKRNRSGELTQSQNDNKEKKRQRKEVGKSVESDNNDNKGGRSRQIKKIKK 223
>SB_7993| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 676
Score = 31.1 bits (67), Expect = 0.79
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = +1
Query: 73 NTSIRLEPQQTAHVGSMATKRKIGDSSSDDNQPKRERVESGEDQQLVPYNNNNGAAFNVK 252
NT+ +PQ + AT IG+S +DDN K + ED+ + N A+ +
Sbjct: 396 NTTEMRDPQAHKTASTSATAASIGESVNDDNN-KSASQQVNEDKDATSQSANKDASTDGA 454
Query: 253 QTKR 264
+T++
Sbjct: 455 ETRK 458
>SB_52954| Best HMM Match : VacA2 (HMM E-Value=9.3)
Length = 491
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = -3
Query: 631 NAKKTGQSCFWHVLWFQSRKTKIRRLALHSWTDGVRSLAVGGSNTTIFLSGSGYNLSSH 455
N + TG S H+LW +++ +I L + TD S A GGS ++ + + N++ H
Sbjct: 156 NGRGTGGSGGGHLLWDVAKRLQINGLLSSNGTDASGSDAGGGSGGSVLVLTT--NMTGH 212
>SB_12752| Best HMM Match : Borrelia_orfA (HMM E-Value=0.15)
Length = 1774
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +1
Query: 133 RKIGDSSSDDNQPKRERVESGEDQQLVPYNNNNGAAFN 246
+K GD+ D + P E+ ES EDQ+ +N AA N
Sbjct: 826 KKGGDAGDDPSDPDEEKDESEEDQERKRHNKK--AALN 861
>SB_10606| Best HMM Match : I-set (HMM E-Value=0)
Length = 872
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = -1
Query: 162 VVAARIANLAFSCHATD--VRCLLWFKSN*SVSQNIRYIINMDGSVV 28
+ A + F C+AT + ++W K + R++IN DGS+V
Sbjct: 572 ITALTNTQVTFRCNATGTPMPSVIWTKDGQVLVSGPRHVINKDGSIV 618
>SB_42686| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 759
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 133 RKIGDSSSDDNQPKRERVESGEDQQLVPYNNNNGAAFNVK 252
R +G + S DN+ R+E+ ++L P N + +VK
Sbjct: 127 RNLGSTGSSDNRTHYRRIETKAPRRLEPLKPNTASRTSVK 166
>SB_52815| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 540
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/45 (37%), Positives = 19/45 (42%)
Frame = +1
Query: 103 TAHVGSMATKRKIGDSSSDDNQPKRERVESGEDQQLVPYNNNNGA 237
T+ GS IGD DD Q R R G YNNN G+
Sbjct: 18 TSGDGSRTFNSNIGDGMEDDRQSNRGRGRGG-------YNNNQGS 55
>SB_39292| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 27.5 bits (58), Expect = 9.7
Identities = 21/95 (22%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Frame = -3
Query: 592 LWFQSRKTKIRRLALHSWTDG-VRSLAVGGSNTTIFLSGSGYNLSSH--SCKLFKLASRQ 422
+WF +R+ ++R+ L TDG + V + ++ + +GY+ + H LF+ S
Sbjct: 594 VWFSNRRARLRKERLLPCTDGAIFGSPVAAFSFSMLQAQAGYHTAYHWKHYLLFRYQSHL 653
Query: 421 NSFFKNLPSKQLQFSIEKLPRFTLIAICSCHNIFV 317
+ F ++ + L +++L R I + + F+
Sbjct: 654 TAVFNSV--RNLADDLQQLIRILASIIQNPRSPFI 686
>SB_22196| Best HMM Match : FtsJ (HMM E-Value=3.6e-25)
Length = 941
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = -3
Query: 508 GSNTTIFLSGSGY--NLSSHSCKLFKLASRQNSFFKNLPSKQLQFSIEKLPRFTLIAICS 335
G N+ ++++ GY NLS ++ A +Q++ ++++ F + +PR L I
Sbjct: 311 GGNSEVYITCCGYTGNLSPQYHEILYTAYQQDT------AEKVLFPLNSIPREFLYLIKE 364
Query: 334 CHNIFVN 314
C F+N
Sbjct: 365 CQEYFIN 371
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +1
Query: 100 QTAHVGSMATKRKIGDSSSDDNQPKRERVESGEDQQ 207
+ H T+R+ G S N PKRER D +
Sbjct: 124 RVGHFARDCTRRRYGGGRSFSNSPKRERQSPDRDDR 159
>SB_58665| Best HMM Match : TSP_1 (HMM E-Value=7.5e-10)
Length = 718
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 73 NTSIR--LEPQQTAHVGSMATKRKIGDSSSDDNQPKRERVE 189
N S++ LE +Q VG M R+ D+ DD + KR+ V+
Sbjct: 550 NLSVKFILEKEQKQPVGLMHRMRRCRDTHPDDTRCKRDNVQ 590
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,106,802
Number of Sequences: 59808
Number of extensions: 457039
Number of successful extensions: 1405
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1404
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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