Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120378.Seq
(639 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97014-1|AAB52425.1| 893|Caenorhabditis elegans Hypothetical pr... 32 0.40
L08970-1|AAA53660.1| 627|Caenorhabditis elegans choline acetylt... 28 6.5
L08969-1|AAA53659.1| 627|Caenorhabditis elegans choline acetylt... 28 6.5
AF036701-3|AAB88370.1| 627|Caenorhabditis elegans Abnormal chol... 28 6.5
Z92793-2|CAD56589.1| 684|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z92793-1|CAB07229.1| 681|Caenorhabditis elegans Hypothetical pr... 27 8.6
Z72503-11|CAD56560.1| 684|Caenorhabditis elegans Hypothetical p... 27 8.6
Z72503-10|CAA96601.1| 681|Caenorhabditis elegans Hypothetical p... 27 8.6
AF043706-5|ABP57808.1| 536|Caenorhabditis elegans Hypothetical ... 27 8.6
AF043706-3|ABP57807.1| 534|Caenorhabditis elegans Hypothetical ... 27 8.6
>U97014-1|AAB52425.1| 893|Caenorhabditis elegans Hypothetical
protein T05E8.1 protein.
Length = 893
Score = 31.9 bits (69), Expect = 0.40
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 130 KRKIGDSSSDDNQPKRERVESGEDQQLVPYNNNNGAAFNVKQTK 261
K K GDSSSDD+ P+R+R E D + + + ++ N K K
Sbjct: 13 KFKRGDSSSDDSGPERDRDEDDSDNESRNTSKTSKSSKNGKSGK 56
>L08970-1|AAA53660.1| 627|Caenorhabditis elegans choline
acetyltransferase protein.
Length = 627
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 478 SGYNLSSHSCKLFKLA-SRQNSFFKNLPSKQLQFSIEKLPRFTL 350
SGY + +H C LF LA R+ + +++PS L ++ RF L
Sbjct: 512 SGYGVDNHLCALFCLAREREETTGEDIPSLFLDPLWSEVMRFPL 555
>L08969-1|AAA53659.1| 627|Caenorhabditis elegans choline
acetyltransferase protein.
Length = 627
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 478 SGYNLSSHSCKLFKLA-SRQNSFFKNLPSKQLQFSIEKLPRFTL 350
SGY + +H C LF LA R+ + +++PS L ++ RF L
Sbjct: 512 SGYGVDNHLCALFCLAREREETTGEDIPSLFLDPLWSEVMRFPL 555
>AF036701-3|AAB88370.1| 627|Caenorhabditis elegans Abnormal choline
acetyltransferaseprotein 1, isoform b protein.
Length = 627
Score = 27.9 bits (59), Expect = 6.5
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = -3
Query: 478 SGYNLSSHSCKLFKLA-SRQNSFFKNLPSKQLQFSIEKLPRFTL 350
SGY + +H C LF LA R+ + +++PS L ++ RF L
Sbjct: 512 SGYGVDNHLCALFCLAREREETTGEDIPSLFLDPLWSEVMRFPL 555
>Z92793-2|CAD56589.1| 684|Caenorhabditis elegans Hypothetical
protein C26C6.5b protein.
Length = 684
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +1
Query: 94 PQQTAHVGSMATKRKIGDSSSDDNQPKRERVESGED 201
PQ+ A+ ++GD ++ + PK+ R+E+G++
Sbjct: 99 PQKRANDDDDMEDEELGDEINEQSAPKKRRLENGKE 134
>Z92793-1|CAB07229.1| 681|Caenorhabditis elegans Hypothetical
protein C26C6.5a protein.
Length = 681
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +1
Query: 94 PQQTAHVGSMATKRKIGDSSSDDNQPKRERVESGED 201
PQ+ A+ ++GD ++ + PK+ R+E+G++
Sbjct: 99 PQKRANDDDDMEDEELGDEINEQSAPKKRRLENGKE 134
>Z72503-11|CAD56560.1| 684|Caenorhabditis elegans Hypothetical
protein C26C6.5b protein.
Length = 684
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +1
Query: 94 PQQTAHVGSMATKRKIGDSSSDDNQPKRERVESGED 201
PQ+ A+ ++GD ++ + PK+ R+E+G++
Sbjct: 99 PQKRANDDDDMEDEELGDEINEQSAPKKRRLENGKE 134
>Z72503-10|CAA96601.1| 681|Caenorhabditis elegans Hypothetical
protein C26C6.5a protein.
Length = 681
Score = 27.5 bits (58), Expect = 8.6
Identities = 10/36 (27%), Positives = 22/36 (61%)
Frame = +1
Query: 94 PQQTAHVGSMATKRKIGDSSSDDNQPKRERVESGED 201
PQ+ A+ ++GD ++ + PK+ R+E+G++
Sbjct: 99 PQKRANDDDDMEDEELGDEINEQSAPKKRRLENGKE 134
>AF043706-5|ABP57808.1| 536|Caenorhabditis elegans Hypothetical
protein ZC123.4b protein.
Length = 536
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = -3
Query: 580 SRKTKIRRLALHSWTDGVRSLAVGGSNTTIFLSGSGYNLSSHSCKLFKLASRQNSFFKNL 401
S K+ I + + T S V G+++ SGSG H+ +F SRQ+ N
Sbjct: 96 STKSPISKNGTNEMTQSWHSNHVNGASSG---SGSGSTPEHHNKNIFSFLSRQSRSRSNN 152
Query: 400 PSKQL 386
PS+ +
Sbjct: 153 PSETM 157
>AF043706-3|ABP57807.1| 534|Caenorhabditis elegans Hypothetical
protein ZC123.4a protein.
Length = 534
Score = 27.5 bits (58), Expect = 8.6
Identities = 19/65 (29%), Positives = 30/65 (46%)
Frame = -3
Query: 580 SRKTKIRRLALHSWTDGVRSLAVGGSNTTIFLSGSGYNLSSHSCKLFKLASRQNSFFKNL 401
S K+ I + + T S V G+++ SGSG H+ +F SRQ+ N
Sbjct: 96 STKSPISKNGTNEMTQSWHSNHVNGASSG---SGSGSTPEHHNKNIFSFLSRQSRSRSNN 152
Query: 400 PSKQL 386
PS+ +
Sbjct: 153 PSETM 157
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,579,288
Number of Sequences: 27780
Number of extensions: 341758
Number of successful extensions: 1070
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1070
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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