Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120377.Seq
         (861 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0496 + 18079905-18081586,18084825-18084868,18086396-180865...    31   1.6  
03_05_0725 + 27155736-27155746,27155798-27155949,27156108-271580...    30   2.1  
05_06_0096 + 25513535-25514024,25514139-25514236,25514395-255147...    29   3.6  

>09_04_0496 +
           18079905-18081586,18084825-18084868,18086396-18086502,
           18087069-18087674,18087789-18088013,18088102-18088167,
           18088268-18088336,18088511-18088582,18088672-18088848,
           18089978-18090115
          Length = 1061

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 3   GSCHNTVKYMVDIYGASVLILRTP 74
           G CHN VK +  IYG + L+L  P
Sbjct: 546 GDCHNAVKLLSKIYGRNPLLLLAP 569


>03_05_0725 +
           27155736-27155746,27155798-27155949,27156108-27158068,
           27159169-27159397,27159506-27159634,27159725-27159838,
           27160059-27160258,27160301-27160599,27160713-27160923,
           27161017-27161172,27161290-27161447,27161532-27161724,
           27162015-27162406,27162537-27162717,27162802-27163031,
           27163108-27163753,27163833-27163902,27163994-27164244
          Length = 1860

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
 Frame = -1

Query: 570 VVQLVALRLLHRVDGFQQLFSNLSNMSVKSGNESVIS----ESNVFNLVKITSLAVSNAA 403
           V+Q VAL L  R        +NL +++++S  E V S    E N  N+ +  S+   N+ 
Sbjct: 415 VIQSVALELPFRTSDGAAKSTNL-DLNMESHMEEVCSSDKTEKNASNMSR-NSVNSVNSV 472

Query: 402 RSCTF*LRTPVITLDNSKN*LVWLRFIWLTLFINMS 295
            S      T      ++ N + W+RF WL+  +++S
Sbjct: 473 SSNILCDETSECDSSSNTNCVFWIRFFWLSGCLSLS 508


>05_06_0096 +
           25513535-25514024,25514139-25514236,25514395-25514783,
           25515485-25515599,25515816-25515917,25516584-25516734,
           25517162-25517250,25517518-25517566,25517723-25517763,
           25517929-25518116,25518285-25518402,25518900-25519079,
           25519172-25519294,25519368-25519455,25519549-25519679,
           25519768-25519866,25520822-25521253
          Length = 960

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
 Frame = +1

Query: 40  FTERPF*FCERLARLPTSC*AHLLQTIICATFTVVADHDHARDHVLLTADLVRDLG--PG 213
           F   PF   E    LP+   + LL++++CA       +D+AR  V     ++   G   G
Sbjct: 295 FLHTPFPSSEIYRTLPSR--SELLRSVLCADLVGFHTYDYARHFVSACTRILGLEGTPEG 352

Query: 214 L-DRGHVHRLP----GKDGTNIRRAGKNSSSKRHVDEQRQ 318
           + D+G + R+     G D    +RA +  + KRH+ E  Q
Sbjct: 353 VEDQGRLTRVAAFPIGIDSERFKRALELPAVKRHITELTQ 392


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,234,905
Number of Sequences: 37544
Number of extensions: 342099
Number of successful extensions: 931
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)