Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120377.Seq
         (861 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)                 30   2.8  
SB_46164| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_26286| Best HMM Match : DUF963 (HMM E-Value=0.82)                   29   4.9  
SB_45916| Best HMM Match : Cadherin (HMM E-Value=0)                    28   8.5  

>SB_33046| Best HMM Match : RRM_1 (HMM E-Value=3.6e-13)
          Length = 1463

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 24/85 (28%), Positives = 37/85 (43%)
 Frame = +1

Query: 148  DHDHARDHVLLTADLVRDLGPGLDRGHVHRLPGKDGTNIRRAGKNSSSKRHVDEQRQPNK 327
            D D  RD    T+D++RD     D     R   +D   +R   + SS  RH D +R  ++
Sbjct: 1054 DRDR-RDRDRHTSDIMRDEPRDRDSKRGSRESSRDRDRLRERDRESSRDRH-DRERDRDR 1111

Query: 328  SQPN*SIFRIVQRDDGRAQSKRAAP 402
            S+    + R   RD  R + +   P
Sbjct: 1112 SRDRDRV-RDRDRDRDRDRDRERVP 1135


>SB_46164| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 784

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 20/68 (29%), Positives = 25/68 (36%)
 Frame = +1

Query: 136 TVVADHDHARDHVLLTADLVRDLGPGLDRGHVHRLPGKDGTNIRRAGKNSSSKRHVDEQR 315
           TVVA     + H    A    D   GL   H H  P    TN   AG  SS    + + R
Sbjct: 18  TVVAGTRKWQGHFSYKASNAFDKSLGLGADHYHNGPTTSPTNSATAGGGSSRSTTLPKMR 77

Query: 316 QPNKSQPN 339
           +   +  N
Sbjct: 78  EATSASAN 85


>SB_26286| Best HMM Match : DUF963 (HMM E-Value=0.82)
          Length = 167

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +3

Query: 528 HQHDAANAAQRVEQHQLYFDQFSVEHHKHQWYAQQFADRYRK 653
           HQ      + R+ +HQ +  ++S   +KHQ +  ++++R  K
Sbjct: 38  HQKHITEYSNRIYKHQKHLTEYSNRIYKHQKHLTEYSNRIYK 79



 Score = 29.1 bits (62), Expect = 4.9
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +3

Query: 528 HQHDAANAAQRVEQHQLYFDQFSVEHHKHQWYAQQFADRYRK 653
           HQ      + R+ +HQ +  ++S   +KHQ +  ++++R  K
Sbjct: 52  HQKHLTEYSNRIYKHQKHLTEYSNRIYKHQKHITEYSNRIYK 93


>SB_45916| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 1774

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -1

Query: 261  ICPVLAWETMNVTAI*TGTEIANEVCREENVISSVIVIGDDGK 133
            + P  AW+T  V       ++   + RE N   SV V+  DGK
Sbjct: 949  LIPGRAWDTFAVNKTTGDIKVTRSLDRESNASYSVTVMASDGK 991


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,664,481
Number of Sequences: 59808
Number of extensions: 406400
Number of successful extensions: 1233
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)