Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120377.Seq
         (861 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g37730.1 68417.m05342 bZIP transcription factor family protei...    32   0.43 
At5g34358.1 68418.m04025 hypothetical protein                          29   4.0  
At3g09850.1 68416.m01175 D111/G-patch domain-containing protein ...    29   4.0  
At3g03360.1 68416.m00334 F-box family protein low similarity to ...    29   4.0  
At1g19720.1 68414.m02463 pentatricopeptide (PPR) repeat-containi...    28   9.2  

>At4g37730.1 68417.m05342 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription factor
          Length = 305

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
 Frame = +1

Query: 403 RGVGNR*RCYFDQIKHVAFRNYRLVTRLD-AHVR*ITEQLLEAINTMQQTQRNELNNTNS 579
           R +GNR R    Q++ V   N RLVT  +   +R    + +  I  +QQ Q+ EL+N   
Sbjct: 235 RELGNRLRLVLHQLQRVNSDNNRLVTEQEILRLRLSEMRRILIIRQLQQQQQWELHNRRM 294

Query: 580 ILT 588
           I+T
Sbjct: 295 IMT 297


>At5g34358.1 68418.m04025 hypothetical protein
          Length = 116

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = +1

Query: 262 IRRAGKNSSSKRHVDEQRQPNKS--QPN*SIFRIVQRDDGRAQSKRAAP 402
           +RR+G  SS+ R  D   QP  S  +P   I  +  +++GR +   A P
Sbjct: 21  VRRSGSTSSTARRADRIDQPRASSFEPREVISDLRVQEEGRGEHPHARP 69


>At3g09850.1 68416.m01175 D111/G-patch domain-containing protein
           contains Pfam profile PF01585: G-patch domain
          Length = 781

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 244 GKDGTNIRRAGKNSSSKRHVDEQRQPNKS 330
           GK G+  R+  K+S+ KR   E+R+ NKS
Sbjct: 549 GKSGSLDRKKAKDSAKKRPTREERERNKS 577


>At3g03360.1 68416.m00334 F-box family protein low similarity to
           ribosomal RNA apurinic site specific lyase [Triticum
           aestivum] GI:6505722; contains F-box domain Pfam:PF00646
          Length = 481

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +2

Query: 107 YCKQLFVLLLPSSPITITLEITFSSRQTSFAISVP 211
           +CK+L VL L  SP  ITLEIT   R     +  P
Sbjct: 221 FCKKLKVLDLSKSPRLITLEITRRCRMEPTQLVAP 255


>At1g19720.1 68414.m02463 pentatricopeptide (PPR) repeat-containing
           protein nearly identical over 405 amino acids to DYW7
           protein of unknown function GB:CAA06829 from
           [Arabidopsis thaliana] (Plant Mol. Biol. 42 (4), 603-613
           (2000)); contains Pfam profile PF01535: PPR repeat
          Length = 894

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 9   CHNTVKYMVDIYGASVLILRTPC 77
           CH+T KY+   YG  +L+  T C
Sbjct: 857 CHDTAKYVSKRYGCDILLEDTRC 879


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,421,901
Number of Sequences: 28952
Number of extensions: 272082
Number of successful extensions: 841
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)