Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120376.Seq
(812 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P19387 Cluster: DNA-directed RNA polymerase II subunit ... 149 6e-35
UniRef50_Q3UUX3 Cluster: 16 days neonate thymus cDNA, RIKEN full... 144 2e-33
UniRef50_Q54DH7 Cluster: RNA polymerase II core subunit; n=1; Di... 101 2e-20
UniRef50_Q75B05 Cluster: ADL120Cp; n=1; Eremothecium gossypii|Re... 90 7e-17
UniRef50_P16370 Cluster: DNA-directed RNA polymerase II subunit ... 88 3e-16
UniRef50_Q4P8L3 Cluster: Putative uncharacterized protein; n=1; ... 85 2e-15
UniRef50_Q39211 Cluster: DNA-directed RNA polymerase II subunit ... 85 2e-15
UniRef50_Q4X0L2 Cluster: RNA polymerase II subunit 3; n=17; Asco... 77 4e-13
UniRef50_A6RAE4 Cluster: Putative uncharacterized protein; n=1; ... 75 2e-12
UniRef50_Q8SRR5 Cluster: DNA-DIRECTED RNA POLYMERASE II THIRD CH... 75 3e-12
UniRef50_Q4UFZ3 Cluster: DNA-directed RNA polymerase ii, putativ... 72 2e-11
UniRef50_A7AWB4 Cluster: DNA-directed RNA polymerase II, putativ... 71 3e-11
UniRef50_Q5CNH1 Cluster: Conjugation stage-specific protein; n=2... 70 6e-11
UniRef50_A4R7L3 Cluster: Putative uncharacterized protein; n=1; ... 69 1e-10
UniRef50_Q9AW23 Cluster: DNA-directed RNA polymerase II; n=1; Gu... 69 2e-10
UniRef50_P95989 Cluster: DNA-directed RNA polymerase subunit D; ... 65 2e-09
UniRef50_Q5KG24 Cluster: RNA polymerase II subunit 3, putative; ... 64 4e-09
UniRef50_Q4DWU1 Cluster: DNA-directed RNA polymerase II subunit ... 64 5e-09
UniRef50_A4RSP9 Cluster: DNA-directed RNA polymerase II subunit ... 61 3e-08
UniRef50_Q8I2S6 Cluster: DNA-directed RNA polymerase II, putativ... 60 7e-08
UniRef50_A2BK79 Cluster: DNA-directed RNA polymerase subunit D; ... 59 1e-07
UniRef50_A3DMQ6 Cluster: RNA polymerase, insert; n=1; Staphyloth... 58 2e-07
UniRef50_O26144 Cluster: DNA-directed RNA polymerase subunit D; ... 58 2e-07
UniRef50_Q9YB53 Cluster: DNA-directed RNA polymerase subunit D; ... 58 2e-07
UniRef50_A2F4R6 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation ... 58 3e-07
UniRef50_P16925 Cluster: Conjugation stage-specific protein; n=2... 56 1e-06
UniRef50_A7DRR8 Cluster: RNA polymerase, insert; n=1; Candidatus... 53 7e-06
UniRef50_Q7PPN8 Cluster: ENSANGP00000012965; n=1; Anopheles gamb... 53 1e-05
UniRef50_Q5KIG6 Cluster: Putative uncharacterized protein; n=1; ... 53 1e-05
UniRef50_Q4PBM5 Cluster: Putative uncharacterized protein; n=1; ... 52 2e-05
UniRef50_A3CWH9 Cluster: RNA polymerase, insert precursor; n=4; ... 51 3e-05
UniRef50_Q39216 Cluster: RNA polymerase subunit; n=10; Magnoliop... 50 5e-05
UniRef50_A5UN55 Cluster: DNA-directed RNA polymerase, subunit D,... 50 7e-05
UniRef50_O15160 Cluster: DNA-directed RNA polymerases I and III ... 50 9e-05
UniRef50_Q235X0 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation ... 49 1e-04
UniRef50_A1RWW0 Cluster: RNA polymerase, insert precursor; n=1; ... 49 1e-04
UniRef50_Q8ZYQ3 Cluster: DNA-directed RNA polymerase subunit D; ... 49 1e-04
UniRef50_Q9UAY9 Cluster: Putative uncharacterized protein; n=2; ... 49 2e-04
UniRef50_Q014V0 Cluster: RNA polymerase subunit; n=2; Ostreococc... 48 3e-04
UniRef50_Q4YX04 Cluster: DNA-directed RNA polymerase I, putative... 48 3e-04
UniRef50_A0D2I2 Cluster: Chromosome undetermined scaffold_35, wh... 48 3e-04
UniRef50_Q7QR57 Cluster: GLP_301_28021_29001; n=2; Giardia intes... 48 4e-04
UniRef50_Q5CJZ9 Cluster: DNA-directed RNA polymerase I; n=2; Cry... 48 4e-04
UniRef50_Q54SN4 Cluster: RNA polymerase III subunit; n=1; Dictyo... 48 4e-04
UniRef50_Q4QDF5 Cluster: DNA-directed RNA polymerase, alpha subu... 48 4e-04
UniRef50_Q4UFV7 Cluster: DNA-directed RNA polymerases I and III,... 47 5e-04
UniRef50_UPI00015B4B82 Cluster: PREDICTED: similar to bifunction... 46 9e-04
UniRef50_Q2UFF5 Cluster: RNA polymerase I and III; n=3; Pezizomy... 46 0.002
UniRef50_Q8TVB8 Cluster: DNA-directed RNA polymerase subunit D; ... 46 0.002
UniRef50_Q4DDL2 Cluster: DNA-directed RNA polymerase, alpha subu... 45 0.003
UniRef50_A3H5J7 Cluster: RNA polymerase, insert; n=3; Thermoprot... 45 0.003
UniRef50_A6R4R6 Cluster: DNA-directed RNA polymerases I and III ... 44 0.005
UniRef50_Q8U0E4 Cluster: DNA-directed RNA polymerase subunit D; ... 44 0.005
UniRef50_UPI0000498947 Cluster: DNA-directed RNA polymerase II s... 44 0.006
UniRef50_Q4X0E8 Cluster: DNA-directed RNA polymerase I and III s... 44 0.006
UniRef50_A0RXU9 Cluster: DNA-directed RNA polymerase, alpha subu... 44 0.006
UniRef50_A0B9L4 Cluster: RNA polymerase, insert; n=1; Methanosae... 43 0.008
UniRef50_P07703 Cluster: DNA-directed RNA polymerases I and III ... 43 0.008
UniRef50_A0DID7 Cluster: Chromosome undetermined scaffold_51, wh... 43 0.011
UniRef50_Q3LWA1 Cluster: DNA-directed RNA polymerase I 40kDa sub... 41 0.043
UniRef50_Q97B93 Cluster: DNA-directed RNA polymerase subunit D; ... 41 0.043
UniRef50_Q3LWA0 Cluster: DNA-directed RNA polymerase II third la... 40 0.056
UniRef50_Q57648 Cluster: DNA-directed RNA polymerase subunit D; ... 40 0.056
UniRef50_O28002 Cluster: DNA-directed RNA polymerase subunit D; ... 40 0.075
UniRef50_UPI00015BADF0 Cluster: DNA-directed RNA polymerase, sub... 39 0.13
UniRef50_Q8SSL9 Cluster: DNA-DIRECTED RNA POLYMERASE I; n=1; Enc... 39 0.17
UniRef50_Q5KCD2 Cluster: Helicase, putative; n=2; Filobasidiella... 38 0.30
UniRef50_Q8PV16 Cluster: DNA-directed RNA polymerase subunit D; ... 37 0.53
UniRef50_UPI0000D8A090 Cluster: rna polymerase ii b3 subunit; n=... 36 1.2
UniRef50_Q4A280 Cluster: Putative DNA-directed RNA polymerase su... 35 2.8
UniRef50_Q0DY01 Cluster: Os02g0723600 protein; n=3; Oryza sativa... 34 4.9
UniRef50_Q7QVM7 Cluster: GLP_305_30255_31307; n=1; Giardia lambl... 34 4.9
UniRef50_Q98S79 Cluster: DNA-directed RNA polymerase 40k chain; ... 33 6.5
UniRef50_UPI00015B5019 Cluster: PREDICTED: similar to GA20163-PA... 33 8.6
UniRef50_Q7KTG2 Cluster: CG15828-PB, isoform B; n=5; Eukaryota|R... 33 8.6
>UniRef50_P19387 Cluster: DNA-directed RNA polymerase II subunit
RPB3; n=36; Eumetazoa|Rep: DNA-directed RNA polymerase
II subunit RPB3 - Homo sapiens (Human)
Length = 275
Score = 149 bits (362), Expect = 6e-35
Identities = 62/81 (76%), Positives = 76/81 (93%)
Frame = +3
Query: 516 DYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPKP 695
DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPTAGV+FEYDPDN +RHT+YPKP
Sbjct: 141 DYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRHTVYPKP 200
Query: 696 DEWPKSEHTELNEDQYEADFN 758
+EWPKSE++EL+ED+ +A ++
Sbjct: 201 EEWPKSEYSELDEDESQAPYD 221
Score = 143 bits (347), Expect = 4e-33
Identities = 61/85 (71%), Positives = 76/85 (89%)
Frame = +1
Query: 250 VRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQ 429
+ ANS+VL DEF+AHR+GLIPLISDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++Q
Sbjct: 52 IDANSSVLHDEFIAHRLGLIPLISDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQ 111
Query: 430 TRHVTTADLKSSDPRVVPVTSRHRD 504
TRHVT+ DL S+ PRV+PVTSR+RD
Sbjct: 112 TRHVTSRDLISNSPRVIPVTSRNRD 136
Score = 54.4 bits (125), Expect = 3e-06
Identities = 22/30 (73%), Positives = 29/30 (96%)
Frame = +3
Query: 99 MPYANQPSVHITELSDENVKFVVEDTELSV 188
MPYANQP+V ITEL+DENVKF++E+T+L+V
Sbjct: 1 MPYANQPTVRITELTDENVKFIIENTDLAV 30
Score = 39.9 bits (89), Expect = 0.075
Identities = 16/22 (72%), Positives = 20/22 (90%)
Frame = +2
Query: 191 NSMRRVFIAETPTMAIDWVQLE 256
NS+RRVFIAE P +AIDWVQ++
Sbjct: 32 NSIRRVFIAEVPIIAIDWVQID 53
>UniRef50_Q3UUX3 Cluster: 16 days neonate thymus cDNA, RIKEN
full-length enriched library, clone:A130010H16
product:polymerase (RNA) II (DNA directed) polypeptide
C, full insert sequence; n=8; Mammalia|Rep: 16 days
neonate thymus cDNA, RIKEN full-length enriched library,
clone:A130010H16 product:polymerase (RNA) II (DNA
directed) polypeptide C, full insert sequence - Mus
musculus (Mouse)
Length = 332
Score = 144 bits (349), Expect = 2e-33
Identities = 60/81 (74%), Positives = 74/81 (91%)
Frame = +3
Query: 516 DYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPKP 695
DY E D+ILI+KLRKGQEL+LRAYAKKGFGKEHAKWNPTA V+ EYDPDN +RHT+YPKP
Sbjct: 141 DYVEQDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAXVALEYDPDNALRHTVYPKP 200
Query: 696 DEWPKSEHTELNEDQYEADFN 758
+EWPKSE++EL+ED+ +A ++
Sbjct: 201 EEWPKSEYSELDEDESQAPYD 221
Score = 141 bits (342), Expect = 2e-32
Identities = 60/85 (70%), Positives = 75/85 (88%)
Frame = +1
Query: 250 VRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQ 429
+ ANS+VL DEF+AHR+GLIPL SDD+VDK++YSRDC C +FC ECSVEFTLDV+C ++Q
Sbjct: 52 IDANSSVLHDEFIAHRLGLIPLTSDDIVDKLQYSRDCTCEEFCPECSVEFTLDVRCNEDQ 111
Query: 430 TRHVTTADLKSSDPRVVPVTSRHRD 504
TRHVT+ DL S+ PRV+PVTSR+RD
Sbjct: 112 TRHVTSRDLISNSPRVIPVTSRNRD 136
Score = 52.8 bits (121), Expect = 1e-05
Identities = 21/30 (70%), Positives = 29/30 (96%)
Frame = +3
Query: 99 MPYANQPSVHITELSDENVKFVVEDTELSV 188
MPYANQP+V ITEL++ENVKF++E+T+L+V
Sbjct: 1 MPYANQPTVRITELTEENVKFIIENTDLAV 30
Score = 39.9 bits (89), Expect = 0.075
Identities = 16/22 (72%), Positives = 20/22 (90%)
Frame = +2
Query: 191 NSMRRVFIAETPTMAIDWVQLE 256
NS+RRVFIAE P +AIDWVQ++
Sbjct: 32 NSIRRVFIAEVPIIAIDWVQID 53
>UniRef50_Q54DH7 Cluster: RNA polymerase II core subunit; n=1;
Dictyostelium discoideum AX4|Rep: RNA polymerase II core
subunit - Dictyostelium discoideum AX4
Length = 302
Score = 101 bits (242), Expect = 2e-20
Identities = 44/80 (55%), Positives = 63/80 (78%)
Frame = +1
Query: 256 ANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTR 435
+N++VL DEF+AHR+GLIPL+SD++ DK Y+RDC C D C +CSVE L+VKCT+ + R
Sbjct: 59 SNNSVLCDEFIAHRLGLIPLVSDNI-DKFCYTRDCSCSDRCDQCSVELRLNVKCTENRPR 117
Query: 436 HVTTADLKSSDPRVVPVTSR 495
VT++DL S + V+PV+S+
Sbjct: 118 DVTSSDLLSQNSAVIPVSSQ 137
Score = 64.5 bits (150), Expect = 3e-09
Identities = 28/61 (45%), Positives = 41/61 (67%)
Frame = +3
Query: 534 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPKPDEWPKS 713
EI I+KLR+GQE+KLRA AKKG GKEHAKW+P+ ++++ P ++ + + K
Sbjct: 146 EIPIVKLRRGQEIKLRAIAKKGVGKEHAKWSPSCVATYQFQPIIVLNQNRIDELTDQQKE 205
Query: 714 E 716
E
Sbjct: 206 E 206
Score = 33.5 bits (73), Expect = 6.5
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 179 IKRTNSMRRVFIAETPTMAIDWVQLE 256
I N++RRV IAE PTM ID V+ E
Sbjct: 33 ISVANALRRVMIAEVPTMCIDLVEFE 58
>UniRef50_Q75B05 Cluster: ADL120Cp; n=1; Eremothecium gossypii|Rep:
ADL120Cp - Ashbya gossypii (Yeast) (Eremothecium
gossypii)
Length = 311
Score = 89.8 bits (213), Expect = 7e-17
Identities = 47/94 (50%), Positives = 62/94 (65%), Gaps = 5/94 (5%)
Frame = +3
Query: 525 EADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLY---PKP 695
EA+ +LI KLRKGQEL+L+ AKKG KEHAKW+P A + FEYDP N +RHT Y P
Sbjct: 138 EANGVLICKLRKGQELRLKCVAKKGIAKEHAKWSPAAAIEFEYDPWNKLRHTDYWHEQDP 197
Query: 696 D-EWPKSEHTELNEDQYEAD-FNWERNQTNSFIM 791
+ EWP S++ E + E D F++ + N+F M
Sbjct: 198 EAEWPHSKNCEFEDPPNEDDQFDYSA-KPNTFYM 230
Score = 72.1 bits (169), Expect = 2e-11
Identities = 32/70 (45%), Positives = 46/70 (65%)
Frame = +1
Query: 250 VRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQ 429
+ +N++VL+DEF++HR+GL+PL S D+ D++ Y RDC C D C CSV TL E
Sbjct: 51 IESNTSVLADEFISHRLGLVPLQSKDI-DQLVYCRDCFCEDHCDRCSVLLTLHAVGESES 109
Query: 430 TRHVTTADLK 459
T +V DL+
Sbjct: 110 TTNVYAKDLQ 119
Score = 34.3 bits (75), Expect = 3.7
Identities = 14/22 (63%), Positives = 19/22 (86%)
Frame = +2
Query: 191 NSMRRVFIAETPTMAIDWVQLE 256
NS+RR+ IAE PT+AID V++E
Sbjct: 31 NSLRRIMIAEIPTLAIDSVEIE 52
>UniRef50_P16370 Cluster: DNA-directed RNA polymerase II subunit
RPB3; n=8; Ascomycota|Rep: DNA-directed RNA polymerase
II subunit RPB3 - Saccharomyces cerevisiae (Baker's
yeast)
Length = 318
Score = 87.8 bits (208), Expect = 3e-16
Identities = 44/93 (47%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Frame = +3
Query: 525 EADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLY----PK 692
E + +LI KLRKGQELKL AKKG KEHAKW P A + FEYDP N ++HT Y
Sbjct: 138 EGNGVLICKLRKGQELKLTCVAKKGIAKEHAKWGPAAAIEFEYDPWNKLKHTDYWYEQDS 197
Query: 693 PDEWPKSEHTELNEDQYEADFNWERNQTNSFIM 791
EWP+S++ E + E D + Q ++F M
Sbjct: 198 AKEWPQSKNCEYEDPPNEGDPFDYKAQADTFYM 230
Score = 77.0 bits (181), Expect = 5e-13
Identities = 36/69 (52%), Positives = 47/69 (68%)
Frame = +1
Query: 250 VRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQ 429
V N+TVL+DEF+AHR+GLIPL S D+ +++ YSRDC C D C +CSV TL E
Sbjct: 51 VETNTTVLADEFIAHRLGLIPLQSMDI-EQLEYSRDCFCEDHCDKCSVVLTLQAFGESES 109
Query: 430 TRHVTTADL 456
T +V + DL
Sbjct: 110 TTNVYSKDL 118
Score = 34.3 bits (75), Expect = 3.7
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = +2
Query: 191 NSMRRVFIAETPTMAIDWVQLE 256
NS+RRV IAE PT+AID V++E
Sbjct: 31 NSLRRVMIAEIPTLAIDSVEVE 52
>UniRef50_Q4P8L3 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 329
Score = 85.4 bits (202), Expect = 2e-15
Identities = 39/93 (41%), Positives = 55/93 (59%), Gaps = 5/93 (5%)
Frame = +3
Query: 522 GEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLY----P 689
G I+++K+ KGQEL +R A+KGF KEHAKW+P + V FEYDP N +RHT Y
Sbjct: 161 GSIAPIMLVKMSKGQELDIRCIARKGFAKEHAKWSPCSAVGFEYDPHNALRHTTYWYEFD 220
Query: 690 KPDEWPKSEHTELNEDQYE-ADFNWERNQTNSF 785
EWP+ + E E E A F++ + + +
Sbjct: 221 AKQEWPEGPNAECEEPPQEGAPFDYNKKASKFY 253
Score = 78.6 bits (185), Expect = 2e-13
Identities = 36/73 (49%), Positives = 45/73 (61%)
Frame = +1
Query: 250 VRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQ 429
+R N+TVL DE LAHR+G++PL+S D + RDC C D C CSVE TL +CT
Sbjct: 57 IRNNTTVLPDEMLAHRLGMVPLLSMDCAKALVDHRDCACEDGCDRCSVELTLRARCTTRG 116
Query: 430 TRHVTTADLKSSD 468
VT+ DL SD
Sbjct: 117 NLEVTSRDLIRSD 129
>UniRef50_Q39211 Cluster: DNA-directed RNA polymerase II subunit
RPB3-A; n=14; Magnoliophyta|Rep: DNA-directed RNA
polymerase II subunit RPB3-A - Arabidopsis thaliana
(Mouse-ear cress)
Length = 319
Score = 85.4 bits (202), Expect = 2e-15
Identities = 43/82 (52%), Positives = 55/82 (67%), Gaps = 3/82 (3%)
Frame = +1
Query: 250 VRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDF---CSECSVEFTLDVKCT 420
+ NS+VL+DEF+AHR+GLIPL S+ + +R+SRDC D C CSVEF L KC
Sbjct: 55 IEVNSSVLNDEFIAHRLGLIPLTSERAMS-MRFSRDCDACDGDGQCEFCSVEFRLSSKCV 113
Query: 421 DEQTRHVTTADLKSSDPRVVPV 486
+QT VT+ DL S+DP V PV
Sbjct: 114 TDQTLDVTSRDLYSADPTVTPV 135
Score = 74.5 bits (175), Expect = 3e-12
Identities = 33/59 (55%), Positives = 44/59 (74%)
Frame = +3
Query: 507 SQADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTL 683
S +D E I+I+KLR+GQELKLRA A+KG GK+HAKW+P A V+F Y+PD I+ +
Sbjct: 142 SVSDSSEHKGIIIVKLRRGQELKLRAIARKGIGKDHAKWSPAATVTFMYEPDIIINEDM 200
Score = 33.9 bits (74), Expect = 4.9
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = +2
Query: 179 IKRTNSMRRVFIAETPTMAIDWVQLEL 259
+ N++RRV I+E PT+AID V++E+
Sbjct: 31 VSMANALRRVMISEVPTVAIDLVEIEV 57
>UniRef50_Q4X0L2 Cluster: RNA polymerase II subunit 3; n=17;
Ascomycota|Rep: RNA polymerase II subunit 3 -
Aspergillus fumigatus (Sartorya fumigata)
Length = 392
Score = 77.4 bits (182), Expect = 4e-13
Identities = 36/75 (48%), Positives = 46/75 (61%)
Frame = +1
Query: 250 VRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQ 429
V N++VL DEFLAHR+GLIPL S + + Y+RDC C D C+ CSV TL +CT ++
Sbjct: 113 VEKNTSVLPDEFLAHRLGLIPLNSKNCDQDVEYTRDCDCEDHCARCSVTLTLHARCTGDE 172
Query: 430 TRHVTTADLKSSDPR 474
V DL S R
Sbjct: 173 IMPVYARDLVVSGER 187
Score = 75.8 bits (178), Expect = 1e-12
Identities = 38/62 (61%), Positives = 41/62 (66%), Gaps = 4/62 (6%)
Frame = +3
Query: 540 LIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLY---PKP-DEWP 707
LI KLR+GQELK+ AKKG KEHAKW PTA V FEYDP N +RH Y P EWP
Sbjct: 206 LICKLRRGQELKMTCVAKKGIAKEHAKWAPTAAVGFEYDPHNNLRHVDYWYEEDPIKEWP 265
Query: 708 KS 713
S
Sbjct: 266 VS 267
Score = 35.5 bits (78), Expect = 1.6
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = +2
Query: 191 NSMRRVFIAETPTMAIDWVQLE 256
NS+RRV +AE PTMAID V++E
Sbjct: 93 NSLRRVILAEVPTMAIDLVEVE 114
>UniRef50_A6RAE4 Cluster: Putative uncharacterized protein; n=1;
Ajellomyces capsulatus NAm1|Rep: Putative
uncharacterized protein - Ajellomyces capsulatus NAm1
Length = 576
Score = 74.9 bits (176), Expect = 2e-12
Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 5/88 (5%)
Frame = +3
Query: 540 LIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLY---PKP-DEWP 707
+I KLR+GQE+K+ AKKG KEHAKW PTA V FEYDP N ++H Y P EWP
Sbjct: 174 VICKLRRGQEIKMTCIAKKGIAKEHAKWAPTAAVGFEYDPHNNLKHVDYWYEEDPIKEWP 233
Query: 708 KSEHTELNED-QYEADFNWERNQTNSFI 788
S + E Q + F+++ + +I
Sbjct: 234 ISANAEWETPAQPDMPFDYDAQPSTFYI 261
Score = 66.9 bits (156), Expect = 6e-10
Identities = 30/69 (43%), Positives = 41/69 (59%)
Frame = +1
Query: 250 VRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQ 429
+ +N++VL DEF++HR+GLIPL S + + YSRDC C C+ C V L +CT E
Sbjct: 81 IESNTSVLPDEFISHRLGLIPLNSKNCDADMEYSRDCDCEGGCARCVVTLQLQARCTGED 140
Query: 430 TRHVTTADL 456
V DL
Sbjct: 141 IMKVYARDL 149
>UniRef50_Q8SRR5 Cluster: DNA-DIRECTED RNA POLYMERASE II THIRD
CHAIN; n=1; Encephalitozoon cuniculi|Rep: DNA-DIRECTED
RNA POLYMERASE II THIRD CHAIN - Encephalitozoon cuniculi
Length = 240
Score = 74.5 bits (175), Expect = 3e-12
Identities = 35/77 (45%), Positives = 49/77 (63%)
Frame = +1
Query: 250 VRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQ 429
+ N+TVL DE LAHR+GLIP+ S +++Y +C C FCSECSV F +DV TD+
Sbjct: 47 IERNNTVLPDEVLAHRLGLIPIYSKR---ELKYKEECSCSGFCSECSVVFEIDVVHTDDT 103
Query: 430 TRHVTTADLKSSDPRVV 480
R V+T D+ + V+
Sbjct: 104 LRTVSTRDIVCDEEDVI 120
Score = 65.3 bits (152), Expect = 2e-09
Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Frame = +3
Query: 540 LIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLY----PKPDEWP 707
+I KL + Q LK R +KG GK HAKW+P + +SFEYD DN+ R T Y +EWP
Sbjct: 126 VITKLARDQGLKARCIGRKGVGKTHAKWSPVSAISFEYDKDNVRRETNYWFEESIEEEWP 185
Query: 708 KSEHTELN 731
E N
Sbjct: 186 GVRQGEAN 193
>UniRef50_Q4UFZ3 Cluster: DNA-directed RNA polymerase ii, putative;
n=2; Theileria|Rep: DNA-directed RNA polymerase ii,
putative - Theileria annulata
Length = 354
Score = 71.7 bits (168), Expect = 2e-11
Identities = 30/74 (40%), Positives = 47/74 (63%)
Frame = +1
Query: 247 TVRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDE 426
TV N++VL DE+++HR+GL+P I + + + C C D C++C+V++TLDV C D
Sbjct: 54 TVLENTSVLHDEYISHRLGLLP-IDSTLASEFEFRDRCQCTDKCAKCTVDYTLDVSCNDS 112
Query: 427 QTRHVTTADLKSSD 468
+R VT D+ D
Sbjct: 113 NSRLVTHFDIVPDD 126
Score = 45.2 bits (102), Expect = 0.002
Identities = 20/46 (43%), Positives = 30/46 (65%)
Frame = +3
Query: 522 GEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 659
G D I I+KL++GQ + ++ A KG GK HAKW A V+++ +P
Sbjct: 151 GATDGIPIVKLKRGQSINMKLTASKGLGKFHAKW-IVANVNYKMEP 195
>UniRef50_A7AWB4 Cluster: DNA-directed RNA polymerase II, putative;
n=1; Babesia bovis|Rep: DNA-directed RNA polymerase II,
putative - Babesia bovis
Length = 382
Score = 70.9 bits (166), Expect = 3e-11
Identities = 34/70 (48%), Positives = 47/70 (67%)
Frame = +1
Query: 247 TVRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDE 426
TV N++VL DE++AHR+GL+P+ S + Y C C D CS C+VE++LDVKC D+
Sbjct: 54 TVLENTSVLHDEYIAHRLGLLPIESSSARN-FEYRDKCTCSDKCSRCTVEYSLDVKCMDD 112
Query: 427 QTRHVTTADL 456
TR VT D+
Sbjct: 113 -TRVVTHYDI 121
Score = 41.5 bits (93), Expect = 0.024
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = +3
Query: 537 ILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 659
I I+KL++GQ L L+ A KG GK HAKW A V+++ +P
Sbjct: 195 IPIVKLKRGQCLSLKMTATKGLGKFHAKW-MVANVAYKMEP 234
>UniRef50_Q5CNH1 Cluster: Conjugation stage-specific protein; n=2;
Cryptosporidium|Rep: Conjugation stage-specific protein
- Cryptosporidium hominis
Length = 355
Score = 70.1 bits (164), Expect = 6e-11
Identities = 36/91 (39%), Positives = 57/91 (62%), Gaps = 1/91 (1%)
Frame = +1
Query: 241 LGTVRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCT 420
L T+ N++VL DEF+ HR+GLIPL S ++ D + C C + C++CSVE+ LDV C
Sbjct: 52 LVTMIDNTSVLHDEFIVHRMGLIPLDSTNIRD-FNFKDRCECQERCNKCSVEYLLDVTCE 110
Query: 421 DEQTRHVTTADLKS-SDPRVVPVTSRHRDEA 510
TR+VT D++ + +VP+ +D++
Sbjct: 111 GGATRNVTHYDIQPVATSTLVPMPVPKKDDS 141
Score = 43.2 bits (97), Expect = 0.008
Identities = 22/54 (40%), Positives = 31/54 (57%)
Frame = +3
Query: 522 GEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTL 683
G + ILI KL GQ + +R A KG GK HAKW P + +F + D + ++L
Sbjct: 144 GMNNGILIAKLGPGQRIAMRMTACKGIGKFHAKWIPVSVATFTNEADVRINYSL 197
>UniRef50_A4R7L3 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 330
Score = 68.9 bits (161), Expect = 1e-10
Identities = 31/65 (47%), Positives = 43/65 (66%), Gaps = 4/65 (6%)
Frame = +3
Query: 537 ILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRH-TLYPK---PDEW 704
+++ KLR+ QE+ +R AKKG KEHAKW P + FEYDP N +RH L+ + +EW
Sbjct: 154 VILFKLRRNQEVHIRCVAKKGIAKEHAKWCPATAIGFEYDPHNKLRHLDLWYESNAKEEW 213
Query: 705 PKSEH 719
P SE+
Sbjct: 214 PLSEN 218
Score = 66.9 bits (156), Expect = 6e-10
Identities = 27/64 (42%), Positives = 42/64 (65%)
Frame = +1
Query: 250 VRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQ 429
++ N++VL+DEF+AHR+GL+PL + + + Y+RDC C +C CSV T+ KC E
Sbjct: 60 IKENTSVLADEFIAHRLGLVPLSARGASELV-YARDCDCEQYCENCSVIITIHAKCESED 118
Query: 430 TRHV 441
+V
Sbjct: 119 PNYV 122
>UniRef50_Q9AW23 Cluster: DNA-directed RNA polymerase II; n=1;
Guillardia theta|Rep: DNA-directed RNA polymerase II -
Guillardia theta (Cryptomonas phi)
Length = 299
Score = 68.5 bits (160), Expect = 2e-10
Identities = 31/72 (43%), Positives = 50/72 (69%)
Frame = +1
Query: 250 VRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQ 429
+ N++ DEF+AHR+GLIP+ S++ D I+YSR+C C + C +CS+ FTLDV +E
Sbjct: 44 IEKNTSSFKDEFIAHRLGLIPIFSENA-DLIKYSRECDCENECEKCSILFTLDVH-ANET 101
Query: 430 TRHVTTADLKSS 465
+ +T++ +K S
Sbjct: 102 EKTITSSMVKCS 113
Score = 59.7 bits (138), Expect = 9e-08
Identities = 23/41 (56%), Positives = 30/41 (73%)
Frame = +3
Query: 537 ILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 659
I+I KL GQ +KL+AY KKG GKEH+KWNP + + F + P
Sbjct: 139 IIIAKLNPGQNIKLKAYVKKGIGKEHSKWNPISSIKFRFYP 179
>UniRef50_P95989 Cluster: DNA-directed RNA polymerase subunit D;
n=4; Sulfolobaceae|Rep: DNA-directed RNA polymerase
subunit D - Sulfolobus solfataricus
Length = 265
Score = 65.3 bits (152), Expect = 2e-09
Identities = 28/78 (35%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCM-CVDFCSECSVEFTLDVKCTDEQTR 435
N++ L DE LAHR+ LIP +S++ +D R+ +C+ C + C +C + ++ + +E R
Sbjct: 49 NNSPLYDEILAHRLALIPFMSEEALDTYRWPEECIECTENCEKCYTKIYIEAEAPNE-PR 107
Query: 436 HVTTADLKSSDPRVVPVT 489
+ + D+KS DP VVP++
Sbjct: 108 MIYSKDIKSEDPSVVPIS 125
Score = 33.1 bits (72), Expect = 8.6
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 534 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 659
+I I+ L Q++ L A + G+GKEHAK+ P + Y P
Sbjct: 127 DIPIVLLGTNQKISLEARLRLGYGKEHAKFIPVSLSVVRYYP 168
>UniRef50_Q5KG24 Cluster: RNA polymerase II subunit 3, putative;
n=2; Filobasidiella neoformans|Rep: RNA polymerase II
subunit 3, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 377
Score = 64.1 bits (149), Expect = 4e-09
Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Frame = +3
Query: 537 ILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLY----PKPDEW 704
ILI K+ KGQE+ + A KG K HAKW+P + V+FEYDP N +RHT + + EW
Sbjct: 191 ILIAKMGKGQEIDVLCKAYKGIAKHHAKWSPLSTVAFEYDPYNKLRHTTHWFETDERAEW 250
Query: 705 PKSEH 719
P S +
Sbjct: 251 PLSSN 255
Score = 59.3 bits (137), Expect = 1e-07
Identities = 27/51 (52%), Positives = 35/51 (68%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDV 411
N+T L+DE +AHR+GLIPLIS +V +RY+RDC C + C C V L V
Sbjct: 73 NTTPLADEMIAHRLGLIPLISRNVSKGLRYTRDCDCDEGCYYCMVTLRLKV 123
>UniRef50_Q4DWU1 Cluster: DNA-directed RNA polymerase II subunit 3,
putative; n=5; Trypanosomatidae|Rep: DNA-directed RNA
polymerase II subunit 3, putative - Trypanosoma cruzi
Length = 363
Score = 63.7 bits (148), Expect = 5e-09
Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 2/84 (2%)
Frame = +1
Query: 247 TVRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMC-VDFCSECSVEFTLDVKC-T 420
T+ N++VL DE +AHRIGL+PL S +++Y+RDC+C C EC + L V C +
Sbjct: 77 TIIQNTSVLPDEMIAHRIGLVPLYSMK-ARRMQYARDCLCGGSGCGECQINGELKVSCPS 135
Query: 421 DEQTRHVTTADLKSSDPRVVPVTS 492
++ + V LK D V PV+S
Sbjct: 136 NKHSLQVFMDSLKIDDEEVYPVSS 159
Score = 38.7 bits (86), Expect = 0.17
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +3
Query: 525 EADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPKPD 698
E + ++ L + QEL LR +K K HAK+ P A V+ Y D ++ + K D
Sbjct: 160 EEHGVWLLTLGRSQELNLRVVIRKNIAKTHAKFMPVATVAMRYASDIVLNPDGFAKLD 217
>UniRef50_A4RSP9 Cluster: DNA-directed RNA polymerase II subunit 3;
n=2; Ostreococcus|Rep: DNA-directed RNA polymerase II
subunit 3 - Ostreococcus lucimarinus CCE9901
Length = 318
Score = 61.3 bits (142), Expect = 3e-08
Identities = 35/77 (45%), Positives = 48/77 (62%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRH 438
NS+VL DEFLAHR+GLIPL S + ++ D ++ +E L+V+C +QTR
Sbjct: 57 NSSVLCDEFLAHRLGLIPLDSTKASELVKPYEYTGDDDTATDVHLE--LNVRCQSDQTRD 114
Query: 439 VTTADLKSSDPRVVPVT 489
VT+ DL S D RV PV+
Sbjct: 115 VTSDDLISHDERVKPVS 131
Score = 56.8 bits (131), Expect = 6e-07
Identities = 26/49 (53%), Positives = 33/49 (67%)
Frame = +3
Query: 537 ILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTL 683
ILI KLRK Q+L L+ A+KG GK+HAKW+P A F+Y P + H L
Sbjct: 145 ILIAKLRKNQQLSLKCIARKGTGKDHAKWSPVATAVFKYTPLIDINHGL 193
>UniRef50_Q8I2S6 Cluster: DNA-directed RNA polymerase II, putative;
n=5; Plasmodium|Rep: DNA-directed RNA polymerase II,
putative - Plasmodium falciparum (isolate 3D7)
Length = 335
Score = 60.1 bits (139), Expect = 7e-08
Identities = 25/71 (35%), Positives = 44/71 (61%)
Frame = +1
Query: 250 VRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQ 429
V N++ DEF+AHR+GLIP+ S +V + + C C + CS+C++++ ++VKC
Sbjct: 56 VYENTSAFHDEFIAHRLGLIPIDSRNV-NNYEFREKCKCKETCSKCTIQYIIEVKCNHSN 114
Query: 430 TRHVTTADLKS 462
V+ D++S
Sbjct: 115 KIDVSHYDIES 125
Score = 46.8 bits (106), Expect = 6e-04
Identities = 32/87 (36%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Frame = +3
Query: 537 ILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPK-PDEWPKS 713
I I+ L K Q L ++ A KG GK HAKW P A VS+ D +++H L K +E
Sbjct: 149 IPIVTLSKNQTLHMKLIATKGIGKMHAKWIP-ANVSYRIDHKVLIKHNLIDKLSNEHKLL 207
Query: 714 EHTELNEDQY--EADFNWERNQTNSFI 788
LN+D Y D + + N N+ I
Sbjct: 208 LANNLNKDCYILNKDTHDDDNNNNNNI 234
>UniRef50_A2BK79 Cluster: DNA-directed RNA polymerase subunit D;
n=1; Hyperthermus butylicus DSM 5456|Rep: DNA-directed
RNA polymerase subunit D - Hyperthermus butylicus
(strain DSM 5456 / JCM 9403)
Length = 281
Score = 59.3 bits (137), Expect = 1e-07
Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCS-ECSVEFTLDVKCTDEQTR 435
N+TVL DE +AHR+GLIPL S + + K + +C + C V L+V+ + R
Sbjct: 50 NNTVLYDEIIAHRLGLIPLTSKEALQKYKRPEECEKAELGDPSCYVVLRLEVETGPREER 109
Query: 436 HVTTADLKSSDPRVVPV 486
V + DL++SDP V PV
Sbjct: 110 IVYSGDLETSDPDVRPV 126
Score = 45.6 bits (103), Expect = 0.002
Identities = 22/57 (38%), Positives = 33/57 (57%)
Frame = +3
Query: 531 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPKPDE 701
D + I+ + Q L+L+AYA+ G+G+EHAKW P + + Y P I+ L DE
Sbjct: 128 DNMPIVVMAPDQRLRLQAYARLGYGREHAKWMPVSVAAHRYLP--ILEFNLDEMSDE 182
>UniRef50_A3DMQ6 Cluster: RNA polymerase, insert; n=1;
Staphylothermus marinus F1|Rep: RNA polymerase, insert -
Staphylothermus marinus (strain ATCC 43588 / DSM 3639 /
F1)
Length = 280
Score = 58.4 bits (135), Expect = 2e-07
Identities = 31/80 (38%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVD----FCSECSVEFTLDVKCTDE 426
NS+V DE++AHR+GLIPL S+ +DK + +C F +C V+ L+ K +
Sbjct: 49 NSSVFYDEYIAHRLGLIPLTSEAALDKYKSPEECREAGDRGLFTEDCFVKLDLEGKGEEG 108
Query: 427 QTRHVTTADLKSSDPRVVPV 486
+ + + DLK+SDP V PV
Sbjct: 109 KLVTLHSGDLKTSDPDVKPV 128
Score = 50.8 bits (116), Expect = 4e-05
Identities = 23/44 (52%), Positives = 30/44 (68%)
Frame = +3
Query: 531 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 662
D I II L K QE++L AYA+ G GKEHAKW+P + + +Y D
Sbjct: 130 DNIPIIVLGKNQEIRLEAYARLGRGKEHAKWSPVSVAAHKYIAD 173
>UniRef50_O26144 Cluster: DNA-directed RNA polymerase subunit D;
n=2; Methanobacteriaceae|Rep: DNA-directed RNA
polymerase subunit D - Methanobacterium
thermoautotrophicum
Length = 264
Score = 58.4 bits (135), Expect = 2e-07
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPLISD-DVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTR 435
N + DE LAHR+GL+PL +D + + ++ +C C ++CSECSV TL K
Sbjct: 49 NDAKMFDEVLAHRLGLVPLAADPEFAESLKMPEECDCEEYCSECSVSLTLRKKGPGV--- 105
Query: 436 HVTTADLKSSDPRVVPV 486
V + DL S P V PV
Sbjct: 106 -VYSGDLVSETPAVKPV 121
Score = 46.8 bits (106), Expect = 6e-04
Identities = 19/42 (45%), Positives = 28/42 (66%)
Frame = +3
Query: 534 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 659
+I ++KL EL+L A A+ G G+EHAKW PT +++Y P
Sbjct: 124 DIPLVKLGDDDELELEAVAQLGVGREHAKWEPTTACAYKYYP 165
>UniRef50_Q9YB53 Cluster: DNA-directed RNA polymerase subunit D;
n=1; Aeropyrum pernix|Rep: DNA-directed RNA polymerase
subunit D - Aeropyrum pernix
Length = 286
Score = 58.4 bits (135), Expect = 2e-07
Identities = 32/79 (40%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSE-CSVEFTL--DVKCTDEQ 429
N+T + DE +AHR+GL+ L S++ V+K R +C + E C VE +L +V E
Sbjct: 55 NTTAVYDEMVAHRLGLVVLDSNEAVEKYRRPEECAGKEPSEEDCFVEVSLEAEVDAEGET 114
Query: 430 TRHVTTADLKSSDPRVVPV 486
R++T DL SDP+V PV
Sbjct: 115 GRYITAGDLSISDPQVKPV 133
Score = 38.7 bits (86), Expect = 0.17
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +3
Query: 534 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 659
E +I + GQ + ++A+A+ G GKEH KW+P + Y P
Sbjct: 136 ETPLIYVAPGQRIHVQAFARLGRGKEHTKWSPASLSVLRYTP 177
>UniRef50_A2F4R6 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation
domain containing protein; n=1; Trichomonas vaginalis
G3|Rep: RNA polymerase Rpb3/Rpb11 dimerisation domain
containing protein - Trichomonas vaginalis G3
Length = 322
Score = 57.6 bits (133), Expect = 3e-07
Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMC----VDFCSECSVEFTLDVKCTDE 426
N++ L DE++AHR+ LIP +S+D DK Y C C + +C C+V +T+D C E
Sbjct: 61 NTSPLPDEYIAHRLALIPFVSED-ADKFFYHSQCNCDGSQLGYCPNCTVIYTIDAHCEPE 119
Query: 427 QTR--HVTTADLKSSDP 471
VT+ DLK P
Sbjct: 120 SDSVVEVTSNDLKLIAP 136
Score = 43.6 bits (98), Expect = 0.006
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = +3
Query: 537 ILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 629
+ I KL GQ L+L AY +KG G+ HAKW+P
Sbjct: 168 VTITKLAPGQTLRLAAYIRKGIGRNHAKWSP 198
>UniRef50_P16925 Cluster: Conjugation stage-specific protein; n=2;
Tetrahymena thermophila|Rep: Conjugation stage-specific
protein - Tetrahymena thermophila
Length = 310
Score = 56.0 bits (129), Expect = 1e-06
Identities = 29/70 (41%), Positives = 39/70 (55%)
Frame = +1
Query: 250 VRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQ 429
V N++ L DE++AHR+GLIPL S VD Y +C C C C++ F L V +
Sbjct: 49 VYENTSSLPDEYIAHRLGLIPLNSAK-VDDYNYIWNCNCQGECDRCTIHFDLRVSNFTNE 107
Query: 430 TRHVTTADLK 459
VT+ DLK
Sbjct: 108 VLEVTSLDLK 117
Score = 49.6 bits (113), Expect = 9e-05
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Frame = +3
Query: 516 DYGEADE--ILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNI 668
+YG E I IIKL KGQ++ A+KG GK H+KWNP +F +P+ I
Sbjct: 140 EYGNKREVGIPIIKLSKGQQIHFECEAQKGIGKMHSKWNPVCISTFSVEPEII 192
>UniRef50_A7DRR8 Cluster: RNA polymerase, insert; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: RNA polymerase,
insert - Candidatus Nitrosopumilus maritimus SCM1
Length = 221
Score = 53.2 bits (122), Expect = 7e-06
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVD--FCSECSVEFTLDVKCTDEQT 432
NS+VL DE LAHR+GLIPL +D + + C C CS C V LD +D T
Sbjct: 59 NSSVLPDEGLAHRLGLIPLKTD--LSRFNEPSKCECQSETGCSNCKVMLVLDSGDSD-VT 115
Query: 433 RHVTTADLKSSDPRVVPVTSR 495
R V + +L S D + P++ +
Sbjct: 116 RTVLSNELSSEDDSITPISDK 136
Score = 44.4 bits (100), Expect = 0.003
Identities = 21/45 (46%), Positives = 30/45 (66%)
Frame = +3
Query: 528 ADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 662
+D+I I++L GQ +K+ YA+ G G EHAKWN +A VS + D
Sbjct: 134 SDKIPIVELAPGQRIKVECYARLGRGTEHAKWN-SANVSMLTETD 177
>UniRef50_Q7PPN8 Cluster: ENSANGP00000012965; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000012965 - Anopheles gambiae
str. PEST
Length = 252
Score = 52.8 bits (121), Expect = 1e-05
Identities = 24/54 (44%), Positives = 34/54 (62%)
Frame = +3
Query: 531 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPK 692
D+ILI K+R G E ++ +A KG GK+HAK++P A VS+ PD + Y K
Sbjct: 143 DDILISKMRPGHEFDIKLFAVKGVGKDHAKFSPVATVSYRLLPDIKLNRPAYVK 196
Score = 39.1 bits (87), Expect = 0.13
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSEC-SVEFTLDVKCTDEQTR 435
N++++ DE LAHR+GLIPL +D + + + + D S ++EF L VKCT +
Sbjct: 54 NTSIIQDEVLAHRLGLIPLRADPRMFEYKANE----TDPPSALDTLEFELKVKCTRKNKD 109
Query: 436 HVTTADLKSSDPRVVPV 486
+ S + VP+
Sbjct: 110 STENHSIYSGQIKWVPI 126
>UniRef50_Q5KIG6 Cluster: Putative uncharacterized protein; n=1;
Filobasidiella neoformans|Rep: Putative uncharacterized
protein - Cryptococcus neoformans (Filobasidiella
neoformans)
Length = 350
Score = 52.8 bits (121), Expect = 1e-05
Identities = 22/48 (45%), Positives = 34/48 (70%)
Frame = +3
Query: 531 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMR 674
D+IL++KLR GQ++ L +A+KG G +HAK++P A S+ P I+R
Sbjct: 193 DDILLVKLRPGQQVDLHCFARKGVGADHAKFSPVATASYRLLPHIILR 240
>UniRef50_Q4PBM5 Cluster: Putative uncharacterized protein; n=1;
Ustilago maydis|Rep: Putative uncharacterized protein -
Ustilago maydis (Smut fungus)
Length = 320
Score = 52.0 bits (119), Expect = 2e-05
Identities = 27/57 (47%), Positives = 35/57 (61%)
Frame = +3
Query: 531 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPKPDE 701
D+ILI KLR GQEL L + +KG GK+HAK++P A ++ P L P PDE
Sbjct: 238 DKILIAKLRPGQELDLELHCEKGIGKDHAKFSPVATATYRLLPH---IQLLQPIPDE 291
>UniRef50_A3CWH9 Cluster: RNA polymerase, insert precursor; n=4;
Methanomicrobiales|Rep: RNA polymerase, insert precursor
- Methanoculleus marisnigri (strain ATCC 35101 / DSM
1498 / JR1)
Length = 276
Score = 51.2 bits (117), Expect = 3e-05
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDF-CSECSVEFTLDVKCTDEQTR 435
N++VL DE LAHR+GLIPL +D + + + +C C D C C+ +TL V E +
Sbjct: 49 NTSVLFDEMLAHRLGLIPLRTD--LKRYKPRSECTCEDAGCPVCTATYTLSV----EGPK 102
Query: 436 HVTTADLKSSDPRVVPVTSR 495
V ++DL DP P +
Sbjct: 103 TVYSSDLIPQDPDAAPADEK 122
Score = 41.1 bits (92), Expect = 0.032
Identities = 23/49 (46%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 516 DYGEADE-ILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 659
D ADE I II+L + Q+L L A A G GKEHAKW T ++ P
Sbjct: 115 DAAPADEKIPIIELARDQKLVLEAQAIVGTGKEHAKWQATTACGYKNYP 163
>UniRef50_Q39216 Cluster: RNA polymerase subunit; n=10;
Magnoliophyta|Rep: RNA polymerase subunit - Arabidopsis
thaliana (Mouse-ear cress)
Length = 385
Score = 50.4 bits (115), Expect = 5e-05
Identities = 22/46 (47%), Positives = 31/46 (67%)
Frame = +3
Query: 534 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIM 671
+ILI KL GQE++L A+A KG GK HAKW+P A + P+ ++
Sbjct: 238 DILIAKLGPGQEIELEAHAVKGIGKTHAKWSPVATAWYRMLPEVVL 283
Score = 38.7 bits (86), Expect = 0.17
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Frame = +1
Query: 250 VRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKC-TDE 426
V N++V+ DE LAHR+GLIP+ +D + + D + ++ F L VKC +
Sbjct: 126 VANNTSVIQDEVLAHRLGLIPIAADPRLFEYLSEND----QPNEKNTIVFKLHVKCLKGD 181
Query: 427 QTRHVTTADLK 459
R V T++LK
Sbjct: 182 PRRKVLTSELK 192
>UniRef50_A5UN55 Cluster: DNA-directed RNA polymerase, subunit D,
RpoD; n=1; Methanobrevibacter smithii ATCC 35061|Rep:
DNA-directed RNA polymerase, subunit D, RpoD -
Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM
861)
Length = 274
Score = 50.0 bits (114), Expect = 7e-05
Identities = 20/44 (45%), Positives = 31/44 (70%)
Frame = +3
Query: 531 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 662
D I ++KL++G++L + A AK G+GKEHAKW PT ++ P+
Sbjct: 120 DTIPLVKLKEGEKLNIEAVAKVGYGKEHAKWMPTTVCVYKQYPE 163
Score = 38.7 bits (86), Expect = 0.17
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Frame = +1
Query: 250 VRANSTVLSDEFLAHRIGLIPLISD-DVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDE 426
+ N + + +E LAHR+GL PL+S+ D ++ + D D+ SV F+L +E
Sbjct: 46 IMRNDSAMFNEVLAHRLGLTPLVSNMDAIEGLPLPGD---DDYEENNSVMFSL----KEE 98
Query: 427 QTRHVTTADLKSSDPRVVPV 486
+ V + DL SSD ++ PV
Sbjct: 99 GPKVVYSKDLISSDSKIKPV 118
>UniRef50_O15160 Cluster: DNA-directed RNA polymerases I and III
subunit RPAC1; n=45; Eumetazoa|Rep: DNA-directed RNA
polymerases I and III subunit RPAC1 - Homo sapiens
(Human)
Length = 346
Score = 49.6 bits (113), Expect = 9e-05
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +3
Query: 531 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 662
D+ILI +LR GQE+ L + KG GK+HAK++P A S+ PD
Sbjct: 195 DDILIAQLRPGQEIDLLMHCVKGIGKDHAKFSPVATASYRLLPD 238
Score = 37.1 bits (82), Expect = 0.53
Identities = 19/54 (35%), Positives = 33/54 (61%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCT 420
N++++ DE LAHR+GLIP+ +D + + R D + +++F L V+CT
Sbjct: 97 NTSIVQDEILAHRLGLIPIHADPRLFEYRNQGD---EEGTEIDTLQFRLQVRCT 147
>UniRef50_Q235X0 Cluster: RNA polymerase Rpb3/Rpb11 dimerisation
domain containing protein; n=1; Tetrahymena thermophila
SB210|Rep: RNA polymerase Rpb3/Rpb11 dimerisation domain
containing protein - Tetrahymena thermophila SB210
Length = 336
Score = 49.2 bits (112), Expect = 1e-04
Identities = 25/72 (34%), Positives = 47/72 (65%), Gaps = 1/72 (1%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCT-DEQTR 435
N++++ DE LAHR+GLIP+ +D + + + D ++ + S++FTL +KC+ EQ +
Sbjct: 94 NTSIIPDEVLAHRLGLIPIYADPRLFEEKQEED----EYNEKNSLKFTLKIKCSKKEQYK 149
Query: 436 HVTTADLKSSDP 471
+ + ADL++ P
Sbjct: 150 NYSEADLENLTP 161
Score = 43.6 bits (98), Expect = 0.006
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 531 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 662
D I++ KLR+ QE+ +KG GK HAKW+P + P+
Sbjct: 197 DNIIVAKLRENQEIICEVICQKGIGKTHAKWSPVCTAYYRLMPE 240
>UniRef50_A1RWW0 Cluster: RNA polymerase, insert precursor; n=1;
Thermofilum pendens Hrk 5|Rep: RNA polymerase, insert
precursor - Thermofilum pendens (strain Hrk 5)
Length = 283
Score = 49.2 bits (112), Expect = 1e-04
Identities = 20/41 (48%), Positives = 28/41 (68%)
Frame = +3
Query: 537 ILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 659
I I+KL KGQ++ L A A+ G G++HAKW P V ++Y P
Sbjct: 129 IPILKLGKGQKISLTAIARMGTGRQHAKWQPVGPVGYKYKP 169
>UniRef50_Q8ZYQ3 Cluster: DNA-directed RNA polymerase subunit D;
n=2; Pyrobaculum|Rep: DNA-directed RNA polymerase
subunit D - Pyrobaculum aerophilum
Length = 260
Score = 49.2 bits (112), Expect = 1e-04
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMC-VDFCSECSVEFTLDVKCTDEQTR 435
N++V+ DE LAHR+GLIPL + + + DC+ + SECS TL V + T
Sbjct: 50 NTSVMYDEMLAHRLGLIPLTTP--LQSLPPYEDCVSGLADPSECSTRLTLQVTAEGDTT- 106
Query: 436 HVTTADLKSSDPRVVPV 486
+ + DL S P VVPV
Sbjct: 107 -IYSGDLASDRPDVVPV 122
Score = 45.6 bits (103), Expect = 0.002
Identities = 22/47 (46%), Positives = 30/47 (63%)
Frame = +3
Query: 534 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMR 674
+I I+KL KGQ + L AYAK G K+HAKW A S+ Y P +++
Sbjct: 125 DIPIVKLVKGQSIVLEAYAKLGVAKDHAKWQ-AATASYYYYPKVVVK 170
>UniRef50_Q9UAY9 Cluster: Putative uncharacterized protein; n=2;
Caenorhabditis|Rep: Putative uncharacterized protein -
Caenorhabditis elegans
Length = 366
Score = 48.8 bits (111), Expect = 2e-04
Identities = 20/44 (45%), Positives = 31/44 (70%)
Frame = +3
Query: 528 ADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 659
+D+IL+ KLR GQE++ +A KG G++HAK++P A S+ P
Sbjct: 215 SDDILVAKLRPGQEIEASCHAVKGIGRDHAKFSPVATASYRLLP 258
>UniRef50_Q014V0 Cluster: RNA polymerase subunit; n=2;
Ostreococcus|Rep: RNA polymerase subunit - Ostreococcus
tauri
Length = 382
Score = 48.0 bits (109), Expect = 3e-04
Identities = 18/44 (40%), Positives = 29/44 (65%)
Frame = +3
Query: 531 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 662
D+IL++KL GQE++L + KG G+EH+KW+P + P+
Sbjct: 228 DDILLVKLAPGQEIELECHCVKGIGQEHSKWSPVGTCWYRMVPE 271
>UniRef50_Q4YX04 Cluster: DNA-directed RNA polymerase I, putative;
n=7; Plasmodium|Rep: DNA-directed RNA polymerase I,
putative - Plasmodium berghei
Length = 334
Score = 48.0 bits (109), Expect = 3e-04
Identities = 25/60 (41%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +3
Query: 531 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFE----YDPDNIMRHTLYPKPD 698
D ILI KL GQE++L + +KG GK HAKW+P ++ +D D + T Y K D
Sbjct: 188 DNILITKLGNGQEIELICFLEKGIGKTHAKWSPVCTAVYKMFPTFDFDVHEKFTNYEKKD 247
>UniRef50_A0D2I2 Cluster: Chromosome undetermined scaffold_35, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_35,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 316
Score = 48.0 bits (109), Expect = 3e-04
Identities = 21/49 (42%), Positives = 30/49 (61%)
Frame = +3
Query: 537 ILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTL 683
I+I KLR+ QEL LR +KG GK HAKW+P ++ P +++ L
Sbjct: 177 IIIAKLRENQELNLRLICEKGVGKRHAKWSPVCTAFYKLMPSITIKNQL 225
Score = 39.5 bits (88), Expect = 0.099
Identities = 21/61 (34%), Positives = 39/61 (63%)
Frame = +1
Query: 235 HRLGTVRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVK 414
H++ ++ N++V+ DE LAHR+GLIP+I+D + + ++ ++ S++FTL K
Sbjct: 72 HKVQVIQ-NTSVIPDEVLAHRLGLIPIIADPLQFVEKDDQE----EYNELNSIDFTLYAK 126
Query: 415 C 417
C
Sbjct: 127 C 127
>UniRef50_Q7QR57 Cluster: GLP_301_28021_29001; n=2; Giardia
intestinalis|Rep: GLP_301_28021_29001 - Giardia lamblia
ATCC 50803
Length = 326
Score = 47.6 bits (108), Expect = 4e-04
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDC----MCVDFCSECSVEFTLDVKCTDE 426
NST L++EF+AHR+GLIPL + + I Y C C EC+ + TL++
Sbjct: 51 NSTTLTEEFIAHRLGLIPLRTAGSLSAISYWYTCDEEHSTEIECRECTFKGTLNISNDST 110
Query: 427 QTRHVTTADLK 459
+ R VT D+K
Sbjct: 111 KIRVVTDKDIK 121
Score = 37.5 bits (83), Expect = 0.40
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +3
Query: 525 EADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGV 641
E I I+KL G+ + YA+K GK HAKW P A V
Sbjct: 142 ETPSIPILKLAPGESINALLYARKDRGKIHAKWCPAACV 180
>UniRef50_Q5CJZ9 Cluster: DNA-directed RNA polymerase I; n=2;
Cryptosporidium|Rep: DNA-directed RNA polymerase I -
Cryptosporidium hominis
Length = 344
Score = 47.6 bits (108), Expect = 4e-04
Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRH 438
N+ V+ DE LAHR+GLIP++ D + R + D + SV F L+VKCT + H
Sbjct: 103 NNGVIQDEVLAHRLGLIPMLIDPNTIEFRNEDE----DLNEKNSVCFKLNVKCTKDDINH 158
Query: 439 ---VTTADLKSSDPRVVPVTSRHR 501
+T+ + S D +P++ R
Sbjct: 159 EKGITSKAIYSKDLVWIPLSDNQR 182
Score = 46.4 bits (105), Expect = 9e-04
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +3
Query: 531 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 662
D+ILI KLR GQ ++ Y +K G+ HAKW+P S+ P+
Sbjct: 195 DDILITKLRPGQSIEAILYCEKNIGRVHAKWSPVCTASYRLLPE 238
>UniRef50_Q54SN4 Cluster: RNA polymerase III subunit; n=1;
Dictyostelium discoideum AX4|Rep: RNA polymerase III
subunit - Dictyostelium discoideum AX4
Length = 345
Score = 47.6 bits (108), Expect = 4e-04
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = +3
Query: 531 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 659
D+I I+KLR GQ + ++ Y +K G+EH KW+P S+ P
Sbjct: 198 DDIPIMKLRPGQVIDIQCYCEKNIGREHIKWSPVCTASYRLQP 240
Score = 37.1 bits (82), Expect = 0.53
Identities = 19/53 (35%), Positives = 33/53 (62%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKC 417
N+++L DE LAHR+G+IP+ VD +++ ++ +E ++ F L VKC
Sbjct: 107 NTSILQDEVLAHRLGMIPI----KVDPRKFNFKLPNKEYTAEDTLIFQLKVKC 155
>UniRef50_Q4QDF5 Cluster: DNA-directed RNA polymerase, alpha
subunit, putative; n=3; Leishmania|Rep: DNA-directed RNA
polymerase, alpha subunit, putative - Leishmania major
Length = 442
Score = 47.6 bits (108), Expect = 4e-04
Identities = 20/39 (51%), Positives = 27/39 (69%)
Frame = +3
Query: 534 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFE 650
+IL+ KL GQ +KL+A A KGFG HAKW+P + +E
Sbjct: 273 DILLTKLGPGQRIKLKAIAVKGFGAVHAKWSPVSACYYE 311
>UniRef50_Q4UFV7 Cluster: DNA-directed RNA polymerases I and III, 40
kDa polypeptide, putative; n=3; Piroplasmida|Rep:
DNA-directed RNA polymerases I and III, 40 kDa
polypeptide, putative - Theileria annulata
Length = 329
Score = 47.2 bits (107), Expect = 5e-04
Identities = 19/42 (45%), Positives = 28/42 (66%)
Frame = +3
Query: 534 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 659
+ILI KL GQE+ L Y +KG GK H+KW+P + +++ P
Sbjct: 178 DILITKLGPGQEIDLNMYLEKGIGKVHSKWSPVSTAVYKFMP 219
Score = 36.7 bits (81), Expect = 0.70
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 6/84 (7%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPL-ISDDVVDKIRYSRDCMCVDFCSEC----SVEFTLDVKCTD 423
N+ V+ DE LAHR+GLIP I D+ + S++ C C E SV F L VK
Sbjct: 81 NTGVVQDELLAHRLGLIPFSIDPDLFNFKSSSKNNHCFADCEEINDKNSVCFKLKVKYNK 140
Query: 424 -EQTRHVTTADLKSSDPRVVPVTS 492
+Q+ +++ + S+D + VP+++
Sbjct: 141 FDQSEYLS---IYSNDLKWVPLSN 161
>UniRef50_UPI00015B4B82 Cluster: PREDICTED: similar to bifunctional
aminoacyl-tRNA synthetase; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to bifunctional aminoacyl-tRNA
synthetase - Nasonia vitripennis
Length = 1549
Score = 46.4 bits (105), Expect = 9e-04
Identities = 20/45 (44%), Positives = 30/45 (66%)
Frame = +3
Query: 528 ADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 662
AD+ILI K+R QE+ +A KG GK+HAK++P A ++ P+
Sbjct: 1399 ADDILICKMRPNQEIHAYMHAVKGIGKDHAKFSPVATATYRLLPE 1443
>UniRef50_Q2UFF5 Cluster: RNA polymerase I and III; n=3;
Pezizomycotina|Rep: RNA polymerase I and III -
Aspergillus oryzae
Length = 373
Score = 45.6 bits (103), Expect = 0.002
Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Frame = +3
Query: 534 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD-NIMRHTL 683
+ILI KLR GQ++ L + KG G +HAK++P A S+ PD I+R L
Sbjct: 209 DILIAKLRPGQKIDLEMHCIKGIGADHAKFSPVATASYRLLPDIQILRPIL 259
Score = 33.5 bits (73), Expect = 6.5
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Frame = +1
Query: 250 VRANSTVLSDEFLAHRIGLIPLI-SDDVVDKIRYSR-----DCMCVDFCSECSVEFTLDV 411
V N++V+ DE LA R+GLIPL S D ++ +R+ + D D ++ LD+
Sbjct: 97 VHNNTSVIQDEVLAQRLGLIPLKGSVDGINWMRWFKKATEDDPEGSDPSDYNTIVLRLDI 156
Query: 412 KCTDEQTRHVTTADLKSSDPR 474
+CT AD +DPR
Sbjct: 157 ECTKN-----PNADATENDPR 172
>UniRef50_Q8TVB8 Cluster: DNA-directed RNA polymerase subunit D;
n=1; Methanopyrus kandleri|Rep: DNA-directed RNA
polymerase subunit D - Methanopyrus kandleri
Length = 275
Score = 45.6 bits (103), Expect = 0.002
Identities = 31/76 (40%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMC-VDFCSECSVEFTLDVKCTDEQTR 435
N T + DE LAHR+GLIPL DD +D+ C C C +C V L+V E
Sbjct: 55 NDTPMYDEMLAHRLGLIPLRVDD-IDQFELPDLCDCGGKGCEKCQVRAELEV----EGPT 109
Query: 436 HVTTADLKSSDPRVVP 483
V DLK P V P
Sbjct: 110 KVYARDLKFDHPDVEP 125
Score = 37.1 bits (82), Expect = 0.53
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = +3
Query: 534 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 662
+ LI ++ + Q ++L A G G EHAKW P + V ++ P+
Sbjct: 129 DTLITEVGEDQRIRLEVIAVPGLGLEHAKWKPVSAVGYKGLPE 171
>UniRef50_Q4DDL2 Cluster: DNA-directed RNA polymerase, alpha
subunit, putative; n=4; Trypanosoma|Rep: DNA-directed
RNA polymerase, alpha subunit, putative - Trypanosoma
cruzi
Length = 393
Score = 44.8 bits (101), Expect = 0.003
Identities = 21/50 (42%), Positives = 28/50 (56%)
Frame = +3
Query: 534 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTL 683
+I++ KL GQ LKLRA A KG G HAKW P + +E +R +
Sbjct: 232 DIILTKLGPGQRLKLRAIALKGIGGVHAKWTPVSVCFYELKTSIYLREPI 281
>UniRef50_A3H5J7 Cluster: RNA polymerase, insert; n=3;
Thermoproteaceae|Rep: RNA polymerase, insert -
Caldivirga maquilingensis IC-167
Length = 305
Score = 44.8 bits (101), Expect = 0.003
Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPLISD-DVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTR 435
N+TV+ DE LAHR+ +IPL ++ + + KI D + VD S C V + L +K D Q
Sbjct: 53 NTTVMYDEVLAHRLSMIPLKTNLEKLPKIEECEDEL-VD-PSLCQVRYQLSIKAND-QVV 109
Query: 436 HVTTADLKSSDPRVVPV 486
V DL DP PV
Sbjct: 110 SVYAKDLIPDDPDFAPV 126
Score = 41.5 bits (93), Expect = 0.024
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +3
Query: 534 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 659
+ LI+K+ KGQ L + AYAK G ++HAKW S+ Y P
Sbjct: 129 DTLIVKMSKGQVLSIEAYAKLGRARDHAKWQACL-ASYYYYP 169
>UniRef50_A6R4R6 Cluster: DNA-directed RNA polymerases I and III 40
kDa polypeptide; n=9; Fungi/Metazoa group|Rep:
DNA-directed RNA polymerases I and III 40 kDa
polypeptide - Ajellomyces capsulatus NAm1
Length = 380
Score = 44.0 bits (99), Expect = 0.005
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +3
Query: 534 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 662
+IL+ KLR GQ++ + + KG G +HAK++P A S+ PD
Sbjct: 211 DILLAKLRPGQKIDIEMHCVKGIGADHAKFSPVATASYRLLPD 253
Score = 34.7 bits (76), Expect = 2.8
Identities = 15/36 (41%), Positives = 26/36 (72%), Gaps = 1/36 (2%)
Frame = +1
Query: 250 VRANSTVLSDEFLAHRIGLIPLI-SDDVVDKIRYSR 354
+ N++V+ DE LAHR+GL+PL S + ++ +R+ R
Sbjct: 97 IHNNTSVIQDEVLAHRLGLVPLTGSSEGINWLRWFR 132
>UniRef50_Q8U0E4 Cluster: DNA-directed RNA polymerase subunit D;
n=5; Thermococcaceae|Rep: DNA-directed RNA polymerase
subunit D - Pyrococcus furiosus
Length = 261
Score = 44.0 bits (99), Expect = 0.005
Identities = 19/31 (61%), Positives = 22/31 (70%)
Frame = +3
Query: 537 ILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 629
I I+KL +GQ L AYAK G GK+HAKW P
Sbjct: 120 IPIVKLAEGQRLVFNAYAKLGRGKDHAKWQP 150
Score = 38.3 bits (85), Expect = 0.23
Identities = 27/76 (35%), Positives = 40/76 (52%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRH 438
N + L DE +AHR+ +IPL + VD R+ D + +D ++T+ + E
Sbjct: 52 NDSALFDEIIAHRLAMIPLTTP--VD--RFELDALELD-------DYTVTLSLEAEGPGI 100
Query: 439 VTTADLKSSDPRVVPV 486
V + DLKS DP V PV
Sbjct: 101 VYSGDLKSDDPDVKPV 116
>UniRef50_UPI0000498947 Cluster: DNA-directed RNA polymerase II
subunit; n=1; Entamoeba histolytica HM-1:IMSS|Rep:
DNA-directed RNA polymerase II subunit - Entamoeba
histolytica HM-1:IMSS
Length = 283
Score = 43.6 bits (98), Expect = 0.006
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = +3
Query: 525 EADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFE 650
+ D I+I +L Q + + Y KKG GK HAKWNPT F+
Sbjct: 127 DVDPIVITQLGPRQNIHMVCYVKKGTGKFHAKWNPTCQCVFQ 168
Score = 39.1 bits (87), Expect = 0.13
Identities = 33/100 (33%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Frame = +1
Query: 238 RLGTVRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKC 417
+L V ANS+ L DEF+AHR+GLIP+ S + +F L +
Sbjct: 51 QLVRVYANSSYLCDEFIAHRLGLIPIDSTQI------------HNFEDTDDAILELKEEN 98
Query: 418 TDEQTRHVTTADLKS-SDPRVVPVTSRHRDEARPIMVKQM 534
Q VT+ DL S D RV PV ++++ PI++ Q+
Sbjct: 99 NSNQLVVVTSNDLVSIGDKRVAPV--NYKNDVDPIVITQL 136
>UniRef50_Q4X0E8 Cluster: DNA-directed RNA polymerase I and III
subunit Rpc40, putative; n=5; Pezizomycotina|Rep:
DNA-directed RNA polymerase I and III subunit Rpc40,
putative - Aspergillus fumigatus (Sartorya fumigata)
Length = 374
Score = 43.6 bits (98), Expect = 0.006
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +3
Query: 534 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 662
+ILI KLR GQ++ + + KG G +HAK++P A ++ PD
Sbjct: 210 DILIAKLRPGQKIDMELHCIKGIGADHAKFSPVATATYRLMPD 252
>UniRef50_A0RXU9 Cluster: DNA-directed RNA polymerase, alpha
subunit/40 kD subunit; n=1; Cenarchaeum symbiosum|Rep:
DNA-directed RNA polymerase, alpha subunit/40 kD subunit
- Cenarchaeum symbiosum
Length = 212
Score = 43.6 bits (98), Expect = 0.006
Identities = 18/33 (54%), Positives = 24/33 (72%)
Frame = +3
Query: 528 ADEILIIKLRKGQELKLRAYAKKGFGKEHAKWN 626
+D I I++L GQ +K+ AYA+ G G EHAKWN
Sbjct: 121 SDTIPIVELAPGQRIKVEAYARLGRGTEHAKWN 153
Score = 37.1 bits (82), Expect = 0.53
Identities = 28/77 (36%), Positives = 43/77 (55%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRH 438
N++VL+DE LAHR+GLIPL +D + + + D + V TLD +TR
Sbjct: 50 NTSVLADEGLAHRLGLIPLRTDS--SEFKNLAEIDPDDPINR--VMLTLD-SGEAAETRT 104
Query: 439 VTTADLKSSDPRVVPVT 489
V +++L S D V P++
Sbjct: 105 VLSSELVSEDSSVKPIS 121
>UniRef50_A0B9L4 Cluster: RNA polymerase, insert; n=1; Methanosaeta
thermophila PT|Rep: RNA polymerase, insert -
Methanosaeta thermophila (strain DSM 6194 / PT)
(Methanothrixthermophila (strain DSM 6194 / PT))
Length = 264
Score = 43.2 bits (97), Expect = 0.008
Identities = 27/78 (34%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Frame = +1
Query: 247 TVRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDF-CSECSVEFTLDVKCTD 423
++ N++VL DE +A R+GL+P+ +DD + +C C C C ++F L T
Sbjct: 45 SIYENTSVLFDEQIALRLGLVPIRADD-LSVYSTPDECQCGGIGCPGCRIDFML----TA 99
Query: 424 EQTRHVTTADLKSSDPRV 477
E V + D+K SDP V
Sbjct: 100 EGPATVHSRDIKFSDPSV 117
>UniRef50_P07703 Cluster: DNA-directed RNA polymerases I and III
subunit RPAC1; n=16; Fungi/Metazoa group|Rep:
DNA-directed RNA polymerases I and III subunit RPAC1 -
Saccharomyces cerevisiae (Baker's yeast)
Length = 335
Score = 43.2 bits (97), Expect = 0.008
Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Frame = +3
Query: 534 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD-NIMR 674
+IL+ KLR GQE+ L+A+ G G +HAK++P + S+ P NI++
Sbjct: 190 DILLAKLRPGQEISLKAHCILGIGGDHAKFSPVSTASYRLLPQINILQ 237
Score = 39.5 bits (88), Expect = 0.099
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVD--FCSECSVEFTLDVKCT 420
N++V+ DE LAHRIGL+PL D D + + + D F E ++ +L+VKCT
Sbjct: 88 NTSVIQDEVLAHRIGLVPLKVDP--DMLTWVDSNLPDDEKFTDENTIVLSLNVKCT 141
>UniRef50_A0DID7 Cluster: Chromosome undetermined scaffold_51, whole
genome shotgun sequence; n=3; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_51,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 308
Score = 42.7 bits (96), Expect = 0.011
Identities = 20/53 (37%), Positives = 30/53 (56%)
Frame = +3
Query: 522 GEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHT 680
G+ I I +L K Q + +R +A KGFGK HAKW P +F ++ + H+
Sbjct: 147 GKEVGIPITRLGKNQSVHVRCHALKGFGKMHAKWTPINIATFRHEAELNFDHS 199
Score = 39.1 bits (87), Expect = 0.13
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPLISDDVVDKI-RYSRDCMCVDFCSECSVEFTLDVKCTDEQTR 435
N++ LSDEFLA R+GLIPL+S K+ + D +D + V FTL K ++
Sbjct: 59 NTSPLSDEFLAQRLGLIPLVSYAADSKMYDWEADADSID-DQKTKVVFTLRQKNLNDAPL 117
Query: 436 HVTTADLKSSDPRVVPVTSRHRDEARPIMVKQM 534
+T+ L+ +V + R PI K++
Sbjct: 118 EITSQHLEPEFGQVGEMAIRPVRMFSPINGKEV 150
>UniRef50_Q3LWA1 Cluster: DNA-directed RNA polymerase I 40kDa
subunit; n=1; Bigelowiella natans|Rep: DNA-directed RNA
polymerase I 40kDa subunit - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 293
Score = 40.7 bits (91), Expect = 0.043
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +3
Query: 531 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIM-RHTLYPK 692
++ILI KL+ Q L L A+ KKG+ +H+K++P A + Y I+ ++ +Y K
Sbjct: 173 EDILITKLKPKQLLFLEAHCKKGYSTQHSKYSPVAAAWYLYYSTTILIKNLIYYK 227
Score = 33.1 bits (72), Expect = 8.6
Identities = 13/19 (68%), Positives = 17/19 (89%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPL 315
N+++L+D LAHRIGLIPL
Sbjct: 76 NTSILNDNILAHRIGLIPL 94
>UniRef50_Q97B93 Cluster: DNA-directed RNA polymerase subunit D;
n=4; Thermoplasmatales|Rep: DNA-directed RNA polymerase
subunit D - Thermoplasma volcanium
Length = 271
Score = 40.7 bits (91), Expect = 0.043
Identities = 21/59 (35%), Positives = 34/59 (57%)
Frame = +3
Query: 534 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPKPDEWPK 710
+I I+KL Q + + A A G KEHAKW T+GV+++Y + + L+ ++W K
Sbjct: 134 DIPIVKLGAKQAILITAEAILGTAKEHAKWQVTSGVAYKYHREFEVNKKLF---EDWAK 189
Score = 37.5 bits (83), Expect = 0.40
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
Frame = +1
Query: 244 GTVRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMC-VDFCSECSVEFTLDVKCT 420
G V +S L DE +AHR+GLIPL +D + + C C CS C+V ++++
Sbjct: 56 GNVYDSSLPLFDEMVAHRLGLIPLKTD---LSLNFRDQCSCGGKGCSLCTVTYSIN---- 108
Query: 421 DEQTRHVTTADLKS-SDPRVVPV 486
V + D+++ S P +VPV
Sbjct: 109 KIGPASVMSGDIQAISHPDLVPV 131
>UniRef50_Q3LWA0 Cluster: DNA-directed RNA polymerase II third
largest subunit; n=1; Bigelowiella natans|Rep:
DNA-directed RNA polymerase II third largest subunit -
Bigelowiella natans (Pedinomonas minutissima)
(Chlorarachnion sp.(strain CCMP 621))
Length = 291
Score = 40.3 bits (90), Expect = 0.056
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 7/66 (10%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCV----DFC---SECSVEFTLDVKC 417
N++ +DEF+AHRIGLIPLIS+ + + + ++ V FC S C V T D +C
Sbjct: 53 NTSNFNDEFIAHRIGLIPLISNTLYEACNWEKNPKIVFDINKFCKNNSSCFVS-TKDYRC 111
Query: 418 TDEQTR 435
+ R
Sbjct: 112 NTFRNR 117
Score = 35.5 bits (78), Expect = 1.6
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +3
Query: 537 ILIIKLRKGQELKLRAYAKKGFGKEHAKW 623
ILI+KL++ Q L ++ KKG G +H KW
Sbjct: 143 ILILKLKQSQVLSMKITLKKGKGSDHTKW 171
>UniRef50_Q57648 Cluster: DNA-directed RNA polymerase subunit D;
n=6; Methanococcales|Rep: DNA-directed RNA polymerase
subunit D - Methanococcus jannaschii
Length = 191
Score = 40.3 bits (90), Expect = 0.056
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +3
Query: 453 FEIERS*SCPCYITT*R*SQADYGEA--DEILIIKLRKGQELKLRAYAKKGFGKEHAKWN 626
F +E+ C Y + +++ GE I I+KL KGQ +++ A G GK HAKW
Sbjct: 82 FTLEKEGPCTVYSSD---LKSENGEVAFKNIPIVKLGKGQRIQIECEAIPGIGKVHAKWQ 138
Query: 627 PTAGVSFEYDPDNI 668
P V + D +
Sbjct: 139 PCNAVYKQIADDEV 152
>UniRef50_O28002 Cluster: DNA-directed RNA polymerase subunit D;
n=1; Archaeoglobus fulgidus|Rep: DNA-directed RNA
polymerase subunit D - Archaeoglobus fulgidus
Length = 264
Score = 39.9 bits (89), Expect = 0.075
Identities = 17/47 (36%), Positives = 31/47 (65%)
Frame = +3
Query: 531 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIM 671
D I +++L +GQ+L L A A+ G G+EHAK+ P + ++ P+ ++
Sbjct: 123 DNIPVLELFEGQQLMLEAVARLGTGREHAKFQPVSVCVYKIIPEIVV 169
>UniRef50_UPI00015BADF0 Cluster: DNA-directed RNA polymerase,
subunit D; n=1; Ignicoccus hospitalis KIN4/I|Rep:
DNA-directed RNA polymerase, subunit D - Ignicoccus
hospitalis KIN4/I
Length = 283
Score = 39.1 bits (87), Expect = 0.13
Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Frame = +1
Query: 250 VRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCM-----------CVDFCSECSVE 396
V N + L +E LAHR+ +IPL S++ +++ CM CV C V
Sbjct: 46 VDRNDSTLFNEVLAHRLAMIPLRSEEALERYAPPEACMECTPEEAEADKCVVDGKPCYVR 105
Query: 397 FTLDVKCTDEQTRHVTTADLKSSDPRVVPV 486
LD +Q V + DLKS D V PV
Sbjct: 106 LYLDASAEGKQI-IVYSKDLKSEDEDVRPV 134
Score = 36.3 bits (80), Expect = 0.92
Identities = 15/33 (45%), Positives = 23/33 (69%)
Frame = +3
Query: 531 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 629
+ I ++ L Q++K+ AYA+ G G+EHAKW P
Sbjct: 136 ENIPVVPLIGDQKVKVIAYARLGRGREHAKWMP 168
>UniRef50_Q8SSL9 Cluster: DNA-DIRECTED RNA POLYMERASE I; n=1;
Encephalitozoon cuniculi|Rep: DNA-DIRECTED RNA
POLYMERASE I - Encephalitozoon cuniculi
Length = 305
Score = 38.7 bits (86), Expect = 0.17
Identities = 22/70 (31%), Positives = 39/70 (55%)
Frame = +1
Query: 250 VRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKCTDEQ 429
++ N +V DEF+AHR+GL+PL D + ++ + + S+ FTLDV+ E
Sbjct: 75 LKENESVFPDEFIAHRLGLVPLEVDP--EMFEFAGE----ELDERNSLRFTLDVRNESEG 128
Query: 430 TRHVTTADLK 459
+V + D++
Sbjct: 129 VLNVYSDDIR 138
Score = 36.3 bits (80), Expect = 0.92
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 528 ADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 659
+ +L+ +L +GQ++ K GK HAKW+P ++ P
Sbjct: 155 SSRVLMFRLARGQKISAELVCTKNVGKVHAKWSPVCPATYRLMP 198
>UniRef50_Q5KCD2 Cluster: Helicase, putative; n=2; Filobasidiella
neoformans|Rep: Helicase, putative - Cryptococcus
neoformans (Filobasidiella neoformans)
Length = 397
Score = 37.9 bits (84), Expect = 0.30
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Frame = +3
Query: 519 YGEADEILIIKLRKGQELKLR-----AYAKKGFGKEHAKWNPTAG--VSFEYDPDNIMRH 677
Y A+++ + G L++R K G+GKE+A +NP G V +Y P+++++H
Sbjct: 287 YAAAEQLATMPPLPGVPLQIRNAPTQLMKKLGYGKEYA-YNPDYGHPVHNDYLPESLLQH 345
Query: 678 TLYPKPDEWPKSEHTELNEDQYEADFNWERNQTNSF 785
+ + S+H DQ+EAD W+ + +
Sbjct: 346 SSHSHDP----SQHILKTADQFEADKKWDEEHLDEW 377
>UniRef50_Q8PV16 Cluster: DNA-directed RNA polymerase subunit D;
n=4; Euryarchaeota|Rep: DNA-directed RNA polymerase
subunit D - Methanosarcina mazei (Methanosarcina frisia)
Length = 266
Score = 37.1 bits (82), Expect = 0.53
Identities = 18/39 (46%), Positives = 26/39 (66%)
Frame = +3
Query: 537 ILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEY 653
I I++L+KGQ+L L A A G+G++ KW AGV+ Y
Sbjct: 126 IPIVELKKGQKLVLEAIAHMGYGRDSVKWQ--AGVACGY 162
>UniRef50_UPI0000D8A090 Cluster: rna polymerase ii b3 subunit; n=1;
Eimeria tenella|Rep: rna polymerase ii b3 subunit -
Eimeria tenella
Length = 147
Score = 35.9 bits (79), Expect = 1.2
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = +1
Query: 241 LGTVRANSTVLSDEFLAHRIGLIPLISDDV 330
L TV N++VL DE++ HR+GL+P+ S +V
Sbjct: 84 LVTVFENTSVLHDEYIVHRLGLLPIDSSNV 113
>UniRef50_Q4A280 Cluster: Putative DNA-directed RNA polymerase
subunit; n=1; Emiliania huxleyi virus 86|Rep: Putative
DNA-directed RNA polymerase subunit - Emiliania huxleyi
virus 86
Length = 229
Score = 34.7 bits (76), Expect = 2.8
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +1
Query: 247 TVRANSTVLSDEFLAHRIGLIPLISD 324
T+ N++V E LAHRIGL+P+IS+
Sbjct: 45 TIHKNTSVYPCELLAHRIGLVPIISE 70
>UniRef50_Q0DY01 Cluster: Os02g0723600 protein; n=3; Oryza
sativa|Rep: Os02g0723600 protein - Oryza sativa subsp.
japonica (Rice)
Length = 327
Score = 33.9 bits (74), Expect = 4.9
Identities = 13/22 (59%), Positives = 20/22 (90%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPLISD 324
N++V++DE L+HR+GLIPL +D
Sbjct: 118 NTSVIADEVLSHRLGLIPLDAD 139
>UniRef50_Q7QVM7 Cluster: GLP_305_30255_31307; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_305_30255_31307 - Giardia lamblia
ATCC 50803
Length = 350
Score = 33.9 bits (74), Expect = 4.9
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 534 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 629
+IL+ KL GQ + Y KG G+ HAK+ P
Sbjct: 181 DILLAKLAPGQRIFCEIYCHKGIGRMHAKFQP 212
>UniRef50_Q98S79 Cluster: DNA-directed RNA polymerase 40k chain;
n=1; Guillardia theta|Rep: DNA-directed RNA polymerase
40k chain - Guillardia theta (Cryptomonas phi)
Length = 339
Score = 33.5 bits (73), Expect = 6.5
Identities = 13/42 (30%), Positives = 23/42 (54%)
Frame = +3
Query: 534 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 659
+ILI+K+ GQE+ + G HAK++P + + +P
Sbjct: 182 DILILKINPGQEIHCECHCLINSGLNHAKFSPVGTIFYRMEP 223
>UniRef50_UPI00015B5019 Cluster: PREDICTED: similar to GA20163-PA;
n=1; Nasonia vitripennis|Rep: PREDICTED: similar to
GA20163-PA - Nasonia vitripennis
Length = 843
Score = 33.1 bits (72), Expect = 8.6
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Frame = +3
Query: 528 ADEILIIKLRKGQELKLRAYAK--KGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPKPDE 701
++++ +K K +L L+A ++ + K H NP V FE+ PD+ H+ +E
Sbjct: 413 SEDVEDVKALKKSKLMLQAKSRLYEKLAKSHNNMNPNFLVDFEHKPDS-SDHS----EEE 467
Query: 702 WPKSEHTELNEDQYEADFNW 761
K+ NE Y++D W
Sbjct: 468 NSKNNGVNENESDYDSDDGW 487
>UniRef50_Q7KTG2 Cluster: CG15828-PB, isoform B; n=5; Eukaryota|Rep:
CG15828-PB, isoform B - Drosophila melanogaster (Fruit
fly)
Length = 4374
Score = 33.1 bits (72), Expect = 8.6
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 594 KGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPKPDEWPKSE 716
K FGK HA W+ + FEY+ + HTL+ W K+E
Sbjct: 1671 KYFGKVHASWSINEVIEFEYEAGILPGHTLH----NWVKAE 1707
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 779,051,322
Number of Sequences: 1657284
Number of extensions: 16026933
Number of successful extensions: 40122
Number of sequences better than 10.0: 75
Number of HSP's better than 10.0 without gapping: 38429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40078
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 70377768045
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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