Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120376.Seq
(812 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3 |Sc... 82 8e-17
SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III ... 44 2e-05
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 28 1.4
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 27 4.2
SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces ... 27 4.2
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 27 4.2
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 26 5.5
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom... 26 5.5
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|... 26 7.3
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb... 26 7.3
SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|c... 25 9.7
SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2 |Schizosacc... 25 9.7
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po... 25 9.7
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo... 25 9.7
>SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 297
Score = 82.2 bits (194), Expect = 8e-17
Identities = 41/80 (51%), Positives = 53/80 (66%), Gaps = 5/80 (6%)
Frame = +3
Query: 540 LIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLY----PKPDEWP 707
LI KLRK QE+ LR AKKG KEHAKW+PT+ V+FEYDP N ++HT Y EWP
Sbjct: 144 LICKLRKEQEISLRCIAKKGIAKEHAKWSPTSAVAFEYDPWNKLQHTDYWFENDADAEWP 203
Query: 708 KSEHTELNEDQYEAD-FNWE 764
KS++ + E E + FN++
Sbjct: 204 KSKNADWEEPPREGEPFNFQ 223
Score = 70.5 bits (165), Expect = 3e-13
Identities = 31/73 (42%), Positives = 47/73 (64%), Gaps = 4/73 (5%)
Frame = +1
Query: 250 VRANSTVLSDEFLAHRIGLIPLISDDVVDK----IRYSRDCMCVDFCSECSVEFTLDVKC 417
+ N++V+ DEFLAHR+G+IPL S ++ + + Y+R+C C +C +CSVE L+ KC
Sbjct: 50 INVNTSVMPDEFLAHRLGMIPLDSSNIDEPPPVGLEYTRNCDCDQYCPKCSVELFLNAKC 109
Query: 418 TDEQTRHVTTADL 456
T E T + DL
Sbjct: 110 TGEGTMEIYARDL 122
Score = 31.9 bits (69), Expect = 0.11
Identities = 13/23 (56%), Positives = 19/23 (82%)
Frame = +2
Query: 191 NSMRRVFIAETPTMAIDWVQLEL 259
NS+RRV +AE PT+AID V++ +
Sbjct: 30 NSLRRVVLAEIPTVAIDLVEINV 52
>SPBC1289.07c |rpc40|rpa42|DNA-directed RNA polymerase I and III
subunit Rpc40 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 44.4 bits (100), Expect = 2e-05
Identities = 19/42 (45%), Positives = 29/42 (69%)
Frame = +3
Query: 534 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDP 659
+I++ KLR GQE+ L A+A G G++HAK++P A S+ P
Sbjct: 197 DIVVAKLRPGQEIDLEAHAILGIGQDHAKFSPVATASYRLLP 238
Score = 33.9 bits (74), Expect = 0.028
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +1
Query: 259 NSTVLSDEFLAHRIGLIPLISD-DVVDKIRYSRDCMCVDFCSECSVEFTLDVKC 417
N++++ DE L+HRIGL+P+ +D D+ ++ +V F+L+ KC
Sbjct: 94 NTSIIQDEVLSHRIGLVPISADPDMFKWFQHPLPGQEATHTDYDTVVFSLNKKC 147
Score = 27.5 bits (58), Expect = 2.4
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 191 NSMRRVFIAETPTMAIDWVQL 253
N+ RR+ IAE PT+A ++V +
Sbjct: 71 NAFRRILIAEIPTLAFEFVYI 91
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 28.3 bits (60), Expect = 1.4
Identities = 18/56 (32%), Positives = 25/56 (44%)
Frame = -3
Query: 774 FGFAPS*SPPHTDLH*VQCARFWAIHLVLDITYVSLYYQGHIQRTHQQLDSILHAL 607
FG AP + H D+ F H ++ + S +Y+ HI HQ S LH L
Sbjct: 1899 FGQAPE-NKAHPDISLNMTPNFKPSHELVQLINSSPFYRKHIISVHQVTRSDLHVL 1953
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 26.6 bits (56), Expect = 4.2
Identities = 23/83 (27%), Positives = 33/83 (39%)
Frame = -1
Query: 524 TIIGLASSLCRDVTGTTLGSLDFKSAVVTCLVCSSVHFTSNVNSTLHSEQKSTHMQSREY 345
T LASS T T S S + SS +S++NST + S+ + S
Sbjct: 191 TSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSISSTVS 250
Query: 344 LILSTTSSDMSGMRPMRCAKNSS 276
TSS+ + A +SS
Sbjct: 251 SSTPLTSSNSTTAATSASATSSS 273
Score = 25.8 bits (54), Expect = 7.3
Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Frame = -1
Query: 485 TGTTLGSLDFKSAVVTCLVCSSVHFTSNVNSTLHSEQ---KSTHMQSREYLILSTTSSDM 315
+ TT SL S + L SS+ +S +S+ S ST+ + S TSS +
Sbjct: 122 SSTTSSSLASSSITSSSLASSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSL 181
Query: 314 SGMRPMRCAKNSSLKTVELALT 249
S A +SSL + L T
Sbjct: 182 SSTAASNSATSSSLASSSLNST 203
>SPCC74.01 |sly1||SNARE binding protein Sly1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 639
Score = 26.6 bits (56), Expect = 4.2
Identities = 7/26 (26%), Positives = 18/26 (69%)
Frame = +3
Query: 96 KMPYANQPSVHITELSDENVKFVVED 173
+ P A+ P+++ + + EN++ ++ED
Sbjct: 83 RQPIADVPAIYFVQPTQENIELIIED 108
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 26.6 bits (56), Expect = 4.2
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Frame = -1
Query: 794 LHYKRICLVSLPVEVRLILIFIKFSVLAFGP-FIWFWI*RMSHYIIRVIFKGHTSSWIPF 618
L + R S+ + R +L+ + ++ + P I+FWI ++ I IF H SW F
Sbjct: 1476 LLFSRFAGPSIYLGSRTLLMLLFGTMTVWIPHLIYFWISTLAMCISPFIFNPHQFSWTDF 1535
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 26.2 bits (55), Expect = 5.5
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Frame = +3
Query: 129 ITELSDEN---VKFVVEDTELSVQTV*DAYLSLKHQQWPSIGYS*S*FHR-FER*ILSTP 296
+TE+ D++ V+FV D ++ AY +LKH WP + + + S+P
Sbjct: 191 VTEIPDQSAFLVRFVYRDEAIA------AYTALKHSAWPVLWAENVTYQNGHYKKKGSSP 244
Query: 297 HRSHSAHIRRRCRQNQ 344
+AH RRR Q +
Sbjct: 245 FSPPNAHSRRRKSQGK 260
>SPCC1442.02 ||SPCC1450.18|DUF1760 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 562
Score = 26.2 bits (55), Expect = 5.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -3
Query: 462 RFQISSCYMSCLFICA 415
RF +S CY++CL C+
Sbjct: 181 RFPVSECYLACLKACS 196
>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
L7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 287
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -3
Query: 543 SIFHLLHHNRPGFISMS*CNRDNSRIARFQISS 445
+++ + H+ PGF N ++R+ARF +SS
Sbjct: 241 AVYEMYPHSLPGFNVNITTNSKDTRLARFFVSS 273
>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 240
Score = 25.8 bits (54), Expect = 7.3
Identities = 13/72 (18%), Positives = 33/72 (45%)
Frame = -3
Query: 708 WAIHLVLDITYVSLYYQGHIQRTHQQLDSILHALSQNLFLHMPEASIPDPCVT**SIFHL 529
+A+ +L+ Y+ + Q + +D +LH + + +H ++ + T HL
Sbjct: 65 YALDSLLEYQQNEEAYEKNFQFIQKLIDDLLHVIEGLVLIHPKSQTLFEDKATLRLFIHL 124
Query: 528 LHHNRPGFISMS 493
L ++P + ++
Sbjct: 125 LQPSQPSMLQVA 136
>SPAC10F6.07c |mug94||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 25.4 bits (53), Expect = 9.7
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -1
Query: 389 LHSEQKSTHMQSREYLILSTTSSDMSGMRPMRCAKNSSLKTVELALTVPNRWP 231
L S QKST ++ +L+ + + +G+ RC N K V ++L N P
Sbjct: 74 LSSNQKSTSKSNQMIKLLNNSLAHNNGLPSQRC--NHDSKLVYMSLVQNNGLP 124
>SPAC3G6.09c |tps2||trehalose-phosphate synthase Tps2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 849
Score = 25.4 bits (53), Expect = 9.7
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
Frame = -1
Query: 416 HFTSNVNSTLHSEQKSTHMQSREYLILSTTSSDMSGMRP---MRC-AKNSSLKTVELALT 249
HF S ++ L E STH+ + + + SS +S P RC +K SLK +L
Sbjct: 287 HFLSTCSNVLGLETTSTHIDTSDGFRVVVFSSHVSIDVPRVYSRCNSKPVSLKIQQLKSL 346
Query: 248 VPNRWPLLV 222
P+ L+V
Sbjct: 347 YPSDKKLIV 355
>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 547
Score = 25.4 bits (53), Expect = 9.7
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -3
Query: 702 IHLVLD-ITYVSLYYQGHIQRTHQQLDSILHALSQN 598
I+++ D ITYV Y + +Q+T++ L ++L L N
Sbjct: 384 INILQDSITYVKNYMEESLQKTYKPLPNLLQYLILN 419
>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1826
Score = 25.4 bits (53), Expect = 9.7
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -1
Query: 647 KGHTSSWIPFCML 609
KGH SWI FC L
Sbjct: 1486 KGHAHSWIGFCRL 1498
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,342,464
Number of Sequences: 5004
Number of extensions: 72761
Number of successful extensions: 197
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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