Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120376.Seq
         (812 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0053 + 873918-874411,875255-875492,875682-875702                 82   6e-16
03_02_0668 - 10290541-10290644,10290777-10290911,10291812-102919...    45   6e-05
02_05_0574 - 30086264-30086367,30087653-30087746,30088293-300885...    34   0.15 
12_02_0339 - 17721664-17722407,17722921-17723556                       30   2.5  
02_05_0447 + 29096853-29097033,29097812-29098146,29098651-290987...    29   5.8  

>09_01_0053 + 873918-874411,875255-875492,875682-875702
          Length = 250

 Score = 81.8 bits (193), Expect = 6e-16
 Identities = 43/83 (51%), Positives = 57/83 (68%), Gaps = 4/83 (4%)
 Frame = +1

Query: 250 VRANSTVLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVD---FCSECSVEFTLDVKCT 420
           +  NS+VL+DEF+AHR+GLIPL S   +  +R+SRDC   D    C  CSVEF L  + T
Sbjct: 59  IEVNSSVLNDEFIAHRLGLIPLTSAAAM-AMRFSRDCDACDGDGSCEYCSVEFHLAARAT 117

Query: 421 D-EQTRHVTTADLKSSDPRVVPV 486
           D +QT  VT+ DL+S+DP+V PV
Sbjct: 118 DSDQTLEVTSNDLRSTDPKVCPV 140



 Score = 68.5 bits (160), Expect = 6e-12
 Identities = 28/42 (66%), Positives = 37/42 (88%)
 Frame = +3

Query: 537 ILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPD 662
           ILI+KLR+GQEL+LRA A+KG GK+HAKW+P A V+F Y+P+
Sbjct: 167 ILIVKLRRGQELRLRAIARKGIGKDHAKWSPAATVTFMYEPE 208



 Score = 34.3 bits (75), Expect = 0.12
 Identities = 14/23 (60%), Positives = 20/23 (86%)
 Frame = +2

Query: 191 NSMRRVFIAETPTMAIDWVQLEL 259
           N++RRV IAE PT+AID V++E+
Sbjct: 39  NALRRVMIAEVPTVAIDLVEIEV 61


>03_02_0668 -
           10290541-10290644,10290777-10290911,10291812-10291905,
           10291994-10292089,10292458-10292639,10293578-10293658,
           10293746-10293875,10293996-10294181,10294567-10294692
          Length = 377

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 19/50 (38%), Positives = 30/50 (60%)
 Frame = +3

Query: 534 EILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTL 683
           +I I +L  GQ ++L  +A KG GK HAKW+P A   +   P+ ++R  +
Sbjct: 225 DITIARLGPGQAIELEVHAVKGIGKVHAKWSPVATAWYRMLPEVVLREEI 274



 Score = 33.9 bits (74), Expect = 0.15
 Identities = 13/22 (59%), Positives = 20/22 (90%)
 Frame = +1

Query: 259 NSTVLSDEFLAHRIGLIPLISD 324
           N++V++DE L+HR+GLIPL +D
Sbjct: 118 NTSVIADEVLSHRLGLIPLDAD 139



 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +2

Query: 191 NSMRRVFIAETPTMAIDWV 247
           N+ RR+ IAE PTMAI+ V
Sbjct: 95  NAFRRILIAEVPTMAIEKV 113


>02_05_0574 -
           30086264-30086367,30087653-30087746,30088293-30088555,
           30089122-30089202,30089293-30089422,30089545-30089730,
           30090013-30090138
          Length = 327

 Score = 33.9 bits (74), Expect = 0.15
 Identities = 13/22 (59%), Positives = 20/22 (90%)
 Frame = +1

Query: 259 NSTVLSDEFLAHRIGLIPLISD 324
           N++V++DE L+HR+GLIPL +D
Sbjct: 118 NTSVIADEVLSHRLGLIPLDAD 139



 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +2

Query: 191 NSMRRVFIAETPTMAIDWV 247
           N+ RR+ IAE PTMAI+ V
Sbjct: 95  NAFRRILIAELPTMAIEKV 113


>12_02_0339 - 17721664-17722407,17722921-17723556
          Length = 459

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
 Frame = +3

Query: 621 WNPTAGVSFEYDPDNIMRHTLY---------PKPDEWPKSEHTELNEDQYEADFNWERNQ 773
           W P  GV     P +I+R +L          P P+  P  +     E+ YEA   + R+ 
Sbjct: 231 WPPVTGVGLALHPLDILRRSLLFGPAPSPRAPAPETAPTDDIIRSAEELYEAGIRFRRSP 290

Query: 774 TNSFI 788
           T+S +
Sbjct: 291 TSSLL 295


>02_05_0447 +
           29096853-29097033,29097812-29098146,29098651-29098782,
           29098870-29099142,29099295-29099477
          Length = 367

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 632 SWIPFCMLFPKTFFCICPK 576
           SW+    LFP  F C CPK
Sbjct: 229 SWLRLAALFPLHFVCACPK 247


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,645,296
Number of Sequences: 37544
Number of extensions: 433253
Number of successful extensions: 1029
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)