Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120376.Seq
         (812 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40270| Best HMM Match : No HMM Matches (HMM E-Value=.)             125   5e-29
SB_24025| Best HMM Match : RNA_pol_A_bac (HMM E-Value=0.024)           45   6e-05
SB_16509| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.16 
SB_29407| Best HMM Match : TP2 (HMM E-Value=0.21)                      33   0.36 
SB_21440| Best HMM Match : RNA_pol_A_bac (HMM E-Value=0.0073)          30   2.6  
SB_49670| Best HMM Match : TIR (HMM E-Value=1.2)                       29   3.4  
SB_6936| Best HMM Match : TP2 (HMM E-Value=1.1)                        28   7.8  
SB_1116| Best HMM Match : THAP (HMM E-Value=0.00013)                   28   7.8  
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_40270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score =  125 bits (301), Expect = 5e-29
 Identities = 51/64 (79%), Positives = 59/64 (92%)
 Frame = +3

Query: 567 ELKLRAYAKKGFGKEHAKWNPTAGVSFEYDPDNIMRHTLYPKPDEWPKSEHTELNEDQYE 746
           ELKLRA+AKKGF KEHAKWNPTAGV+FEYDPDN +RHT YP+P+EWPKSE+TEL EDQY+
Sbjct: 1   ELKLRAFAKKGFAKEHAKWNPTAGVAFEYDPDNALRHTTYPRPEEWPKSEYTELEEDQYQ 60

Query: 747 ADFN 758
           A F+
Sbjct: 61  APFD 64


>SB_24025| Best HMM Match : RNA_pol_A_bac (HMM E-Value=0.024)
          Length = 59

 Score = 45.2 bits (102), Expect = 6e-05
 Identities = 19/33 (57%), Positives = 27/33 (81%)
 Frame = +3

Query: 531 DEILIIKLRKGQELKLRAYAKKGFGKEHAKWNP 629
           ++ILI KLR GQEL ++ +A KG GK+HAK++P
Sbjct: 11  NDILIAKLRPGQELDIKMHAVKGVGKDHAKFSP 43


>SB_16509| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 14/56 (25%), Positives = 27/56 (48%)
 Frame = +1

Query: 340 IRYSRDCMCVDFCSECSVEFTLDVKCTDEQTRHVTTADLKSSDPRVVPVTSRHRDE 507
           + ++ D    +   EC V   +++K  D +T   +  D++  +P V P T +H  E
Sbjct: 53  VSWTTDQQLTEALQECGVTDLINIKFFDNRTNGQSKGDIEGQNPVVTPATKQHLHE 108


>SB_29407| Best HMM Match : TP2 (HMM E-Value=0.21)
          Length = 215

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -1

Query: 383 SEQKSTHMQSREYLILSTTSSDMSGMRPMRCAKNSSLKTVELALTVPNRWP 231
           + QKST     +   L TT+ D S  R + C K   + TVE   + P + P
Sbjct: 69  NRQKSTRRSDGDMPALGTTAQDNSSQRSIPCTKPFGIFTVETPKSQPGKRP 119


>SB_21440| Best HMM Match : RNA_pol_A_bac (HMM E-Value=0.0073)
          Length = 287

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +1

Query: 268 VLSDEFLAHRIGLIPLISDDVVDKIRYSRDCMCVDFCSECSVEFTLDVKC 417
           +L  E LAHR+GLIP+ +D  +   +   D    D   + ++ F L VKC
Sbjct: 186 ILLAEVLAHRLGLIPIHADPRLFNYKKQGDEEAQD---DTTLVFELKVKC 232


>SB_49670| Best HMM Match : TIR (HMM E-Value=1.2)
          Length = 512

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 513 ADYGEADEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPT 632
           A  GEAD  L +   K Q+LK  A++  G     A+W  T
Sbjct: 340 ASSGEADSFLRVTYLKDQKLKSEAFSHSGDQLTTAEWEQT 379


>SB_6936| Best HMM Match : TP2 (HMM E-Value=1.1)
          Length = 256

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = +1

Query: 406 DVKCTDEQTRHVTTADLKSSDPRVVPVTSRHRDEARPIMVKQMKY*SLSYARVRN*SF 579
           DVK  D + RH + A  +S  P+      RHR E+R     + K  S S +R R+ S+
Sbjct: 79  DVKKNDNKERHQSRATRRSKSPK-----HRHRPESRSRSGSRSKSRSRSRSRGRSRSY 131


>SB_1116| Best HMM Match : THAP (HMM E-Value=0.00013)
          Length = 331

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = +3

Query: 600 FGKEHAKWNPTAGVSFEYDPDNIMRHTLYPKPDEWPKSEHT 722
           F +    W PT  +  E  PD  +  +   +PDE PK   T
Sbjct: 76  FDENDVDWAPTLKLGDESKPDKPVPKSTRKRPDESPKDART 116


>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3003

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 669 MRHTLYPKPDEWPKSEHTELNEDQYEADFNW 761
           +RHT+Y +    P++ HT+ +    E D +W
Sbjct: 16  LRHTMYKESPPSPRASHTDGDTAAQELDSDW 46


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,674,040
Number of Sequences: 59808
Number of extensions: 525907
Number of successful extensions: 1385
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1377
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2263654701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)